OOR/ConferenceCall 2012 05 22

OpenOntologyRepository: OOR Development Workshop-VIII - Tue 2012_05_22    (3ANW)

This is our 8th OOR-dev workshop, a workshop series devoted to the discussion and synchronization of the various development efforts toward the OOR system and platform. Among other agenda items, this workshop will provide the opportunity for code contributors to compare notes on "adding tabs" (as a follow-up to our last OOR Architecture & API Workshop - OOR/ConferenceCall_2012_05_08 - devoted to discussing the merits of "tabs" and other related issues.)    (3BMA)

Topic: Getting OOR Development Going - Take-VIII    (3ANX)

Session Chair: MikeDean (Raytheon-BBN)    (3BHV)

... please refer also to proceedings from the last workship on this OOR-dev series at OOR/ConferenceCall_2012_02_28    (3BLW)

Conference Call Details:    (3BLX)

• Date: Tuesday, 22-May-2012    (3BLY)
• Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 15:30 UTC    (3BLZ)
  • ref: World Clock    (3BM0)
• Expected Call Duration: ~1.5 hours    (3BM1)

• Dial-in:    (3BM2)
  • Phone (US): +1 (206) 402-0100 (long distance cost may apply)    (3BM3)
    • ... [ backup nbr: (415) 671-4335 ]    (3BM4)
  • Skype: joinconference ... generally free-of-charge, when connecting from your computer)    (3BM5)
  • when prompted enter PIN: 141184#    (3BM6)

• Shared-screen support (VNC session), if applicable, will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/    (3BHW)
  • view-only password: "ontolog"    (3BHX)
  • if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.    (3BHY)
  • people behind corporate firewalls may have difficulty accessing this. If that is the case, please point your browser directly to the [ slides] (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.    (3BHZ)

• In-session chat-room url: http://webconf.soaphub.org/conf/room/oor_20120522    (3BI0)

• RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)    (3BI1)

• This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_05_22    (3BI2)

• Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.    (3BI3)

Attendees    (3BM7)

• Attended:    (3BI4)
  • MikeDean (chair)    (3BI6)
  • PeterYim (scribe)    (3BI7)
  • KenBaclawski    (3BI8)
  • ToddSchneider    (3BI9)
  • TimDarr    (3BIC)
  • RaviSharma    (3BMU)

• Expecting:    (3BI5)
  •    (3BIB)
  • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...    (3BID)

• Regrets:    (3BIE)
  • MikeBennett    (3BIF)
  • MichaelGruninger    (3BIA)
  • ...    (3BIG)

Agenda Ideas:    (3BM8)

please insert any additional items below (along with your name for follow-up purposes)    (3BIH)

• code contributors to compare notes on "adding tabs"    (3BII)
• discussion on how we can continue to engage the other potential code contributors    (3BIJ)
• review our code development focus and direction, to make sure we stay relevant to external changes and standardization efforts (especially in light of recent trends in related work):    (3BIK)
  • "big data"    (3BMN)
  • Linked Open Data (LOD)    (3BMO)
  • graph-based search/computation    (3BMP)
• PeterYim: coordinate near-term and medium term OOR development efforts    (3BIL)

• ...    (3BM9)

Agenda & Proceedings    (3BIM)

Archives:    (3BIN)

• audio recording of the session [ 1:11:07 ; mp3 ; 8.14 MB ]    (3BIO)
• chat-transcript of this session    (3BIP)

1. Meeting called to order:    (3BIQ)

• MikeDean takes the chair and welcomes everyone    (3BIR)
• PeterYim volunteered to take notes    (3BIS)
• review and adopt agenda    (3BIT)

2. Roll Call:    (3BIU)

• see above    (3BIV)
• welcome and intro of new member(s) (if applicable)    (3BIW)

3. Key items for review and discussion today:    (3BIX)

• code contributors to compare notes on "adding tabs"    (3BMB)
  • MikeDean: have not had a chance to do actual work, but did review PaulAlexander's updated documentation, which seems to be quite comprehensive now - see: http://palexander.posterous.com/extending-bioportals-rails-ui    (3BMV)
  • KenBaclawski: Maximo's "Keeper" was in SOAP, while BioPortal web-services is RESTful ... I (Ken) have code that can handle both SOAP and REST    (3BMW)
    • Ken & Maximo will deploy that code to, in a sense, re-implement the despatch mechanism, which will be able to take care of this (REST vs. SOAP) problem ... the plan will be to have this code being independent of the BioPortal codebase    (3BMX)

• discussion on how we can continue to engage the other potential code contributors    (3BMC)
  • possibilities -    (3BMY)
    • ToddSchneider: tried, a while back, STIDS - tried to engage KathyLaskey    (3BMZ)
    • TimDarr - may have a resource in a month or so; will see    (3BN0)
    • MikeDean: SOCoP - NaijunZhou from UMD may have something to contribute; Mike will talk to him to explore possibilities    (3BN1)

• review our code development focus and direction, to make sure we stay relevant to external changes and standardization efforts (especially in light of recent trends in related work):    (3BMD)
  • "big data"    (3BMQ)
  • Linked Open Data (LOD)    (3BMR)
  • graph-based search/computation    (3BMS)
    • MikeDean / PeterYim: Related work: OData, GData, Google Knowledge Graph, Cray - uRiKA, Neo4J    (3BN3)
      • OData (http://en.wikipedia.org/wiki/Open_Data_Protocol & http://ontolog.cim3.net/forum/ontolog-forum/2012-05/msg00056.html )    (3BN4)
      • GData (http://en.wikipedia.org/wiki/GData )    (3BN2)
      • - ref. http://ontolog.cim3.net/forum/ontolog-forum/2012-05/msg00028.html    (3BNB)
      • Cray - uRiKA (Universal RDF Integration Knowledge Appliance) - see: http://www.hpcwire.com/hpcwire/2012-03-01/cray_parlays_supercomputing_technology_into_big_data_appliance.html    (3BN5)
      • Neo4J - ref. thread: http://ontolog.cim3.net/forum/ontolog-forum/2012-04/msg00086.html - DuaneNickull is organizing an Ontolog session on this    (3BN6)
  • KenBaclawski / PeterYim: even a little reason, when applied to huge amount of data that touches a huge user-base, could make a lot of impact    (3BN7)
  • Possibilities:    (3BN8)
    • MikeDean: One approach is to export and/or ontologies to some of these new formats.    (3BN9)
    • PeterYim / MikeDean: OOR ontologies could become the lingua franca for mapping in various domains.    (3BNA)

• coordinate near-term and medium term OOR development efforts    (3BME)

4. Revisiting our "Most Critical Tasks At Hand" list ...(which we haven't reviewed for a while now) ... defer to our next OOR-Team call 2012_06_12    (3BMF)

• see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH    (3BMG)

5. Schedule Next Meeting & Adjourn:    (3BMK)

• Next Meetings:    (3BIY)
  • 2012_05_29 - OOR-Content-II - Tue 2012.05.29 - Co-chair: MichaelGruninger & MikeDean    (3BIZ)
  • 2012_06_05 - no OOR meeting, SemTech will be in session    (3BMM)
  • 2012_06_12 - next Regular OOR Team meeting - first Tuesday of the month - OOR/ConferenceCall_2012_06_12    (3BJ0)
  • ... please mark your calendars and come!    (3BJ1)

• Call adjourned at: 9:50 am PDT    (3BJ2)

 --
 notes taken by: PeterYim / 2012.05.22-9:59am PDT
 All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.    (3BJ3)

---

Resources    (3BJ4)

• Homepage for the Open Ontology Repository Initiative - OpenOntologyRepository - http://OpenOntologyRepository.org or simply http://www.oor.net    (3BJ5)
• OOR Charter - To promote the global use and sharing of ontologies by:    (3BJ6)
  • 1. establishing a hosted registry-repository;    (3BJ7)
  • 2. enabling and facilitating open, federated, collaborative ontology repositories;    (3BJ8)
  • 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.    (3BJ9)
• "Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"    (3BJA)
• Team mailling list:    (3BJB)
  • OOR-Team discussion: [ oor-forum ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/    (3BJC)
  • OOR-Users discussion and support: [ oor-users ]''' message archives - http://ontolog.cim3.net/forum/oor-users/    (3BJD)
  • Developers mailling list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/    (3BJE)
• proceedings of our previous meetings, panel discussions and workshops    (3BJF)

• the Joint OOR-OntologySummit2008 Panel Discussions:    (3BJG)
  • 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28    (3BJH)
  • 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, JohnLMcCarthy, KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27    (3BJI)
  • 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03    (3BJJ)
  • 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy & ElisaKendall - ConferenceCall_2008_04_10    (3BJK)

• the OOR Development panel sessions:    (3BJL)
  • 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen, LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22    (3BJM)
  • 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: ToddSchneider; Panelists: MarkMusen, NatashaNoy, MikeDean, PaulBuitelaar / AndreasHarth, MathieuDaquin, KenBaclawski, MichaelGruninger - ConferenceCall_2009_02_19    (3BJN)
  • 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: MarkMusen - Panelists: TaniaTudorache, TimRedmond, NatashaNoy - ConferenceCall_2009_07_16    (3BJO)
  • 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: NatashaNoy - Panelists: CarlosRueda, PaulAlexander, JohnGraybeal, MikeDean, StephenGranite, AlexGarcia, KenBaclawski - ConferenceCall_2009_07_30    (3BJP)
  • 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: MikeDean - Panelists: JimChatigny, MichaelGruninger, KenBaclawski, NatashaNoy - OOR/ConferenceCall_2010_02_19    (3BJQ)
  • 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: KenBaclawski & ToddSchneider - Panelists: ToddSchneider, MatthewHettinger, KenBaclawski and MaximoGurmendez - ConferenceCall_2010_04_01    (3BJR)
  • 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: JohnSowa - Panelists: JohnBateman-TillMossakowski, MichaelGruninger, CameronRoss, AdamPease, PatHayes - ConferenceCall_2010_09_10    (3BJS)
  • 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: ToddSchneider & MichaelGruninger - Panelists: ToddSchneider, MikeDean, NatashaNoy, ImmanuelNormann, KenBaclawski, MichaelGruninger - OOR/ConferenceCall_2010_09_17    (3BJT)

•    (3BJU)
  • 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15    (3BJV)
  • 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: RayFergerson & PeterYim - OOR/ConferenceCall_2011_09_13    (3BJW)
  • 2011_11_29 - Tuesday: Joint NCBO-OOR Session - "OOR Architecture & API Workshop-IX: BioPortal & OOR Synergies" - Co-chairs: KenBaclawski & ToddSchneider - Discussant: RayFergerson - OOR/ConferenceCall_2011_11_29    (3BJX)
  • 2012_03_27 - Tuesday: OOR presentation: "Ontohub: an OOR-compliant Repository for Distributed Ontologies" - Chair: TillMossakowski - OOR/ConferenceCall_2012_03_27    (3BJY)

•    (3BJZ)
  • 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: KenBaclawski & MichaelGruninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, EricChan - OOR/ConferenceCall_2010_11_19    (3BK0)
  • 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_04    (3BK1)
  • 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_11    (3BK2)
  • 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_25    (3BK3)
  • 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_04_22    (3BK4)
  • 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_05_20    (3BK5)
  • 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_06_17    (3BK6)
  • 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_09_20    (3BK7)
  • 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VIII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_10_11    (3BK8)
  • 2012_01_31 - Tuesday: OOR - "Architecture & API Workshop-X" - Co-chairs: ToddSchneider & KenBaclawski - OOR/ConferenceCall_2012_01_31    (3BK9)
  • 2012_03_20 - Tuesday: OOR - "Architecture & API Workshop-XI" - Co-chairs: ToddSchneider & KenBaclawski - OOR/ConferenceCall_2012_03_20    (3BKA)
  • 2012_05_08 - Tuesday: OOR - "Architecture & API Workshop-XII" - Co-chairs: ToddSchneider & KenBaclawski - OOR/ConferenceCall_2012_05_08    (3BML)

•    (3BKB)
  • 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: MikeDean - "Getting OOR Development going, on Eclipse?" - OOR/ConferenceCall_2011_11_08    (3BKC)
  • 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: MikeDean - OOR/ConferenceCall_2011_11_22    (3BKD)
  • 2012_02_28 - Tuesday: "Getting OOR Development Going - Take-VII" Workshop - Chair: KenBaclawski - OOR/ConferenceCall_2012_02_28    (3BKE)

•    (3BKF)
  • 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: MichaelGruninger - OOR/ConferenceCall_2011_03_18    (3BKG)
  • 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_13    (3BKH)
  • 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_27    (3BKI)
  • 2011_10_18 - Tuesday: OOR Metadata Workshop-IV - Chair: MichaelGruninger - OOR/ConferenceCall_2011_10_18    (3BKJ)
  • 2012_01_17 - Tuesday: OOR Metadata Workshop-V - Chair: MichaelGruninger - OOR/ConferenceCall_2012_01_17    (3BKK)
  • 2012_03_06 - Tuesday: OOR Metadata Workshop-VI - Chair: MichaelGruninger - OOR/ConferenceCall_2012_03_06    (3BKL)
  • 2012_04_24 - Tuesday: OOR Metadata Workshop-VII - Chair: MichaelGruninger - OOR/ConferenceCall_2012_04_24    (3BKM)

•    (3BKN)
  • 2011_12_13 - Tuesdayday: OOR Infrastructure Workshop - Chair: PeterYim - OOR/ConferenceCall_2011_12_13    (3BKO)

• the OOR-IPR mini-series:    (3BKP)
  • 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: GeorgeStrawn - Chair: PeterYim - Panelists: JamieClark, JohnWilbanks, BrucePerens - ConferenceCall_2010_09_09    (3BKQ)
  • 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: MarkMusen - Panelists: CameronRoss, AlanRector, JohnSowa, BrucePerens, JohnWilbanks, PeterYim - ConferenceCall_2010_09_16    (3BKR)
  • 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: LeoObrst - Panelists: PeterYim, MikeDean, BrucePerens, JamieClark - ConferenceCall_2010_09_30    (3BKS)

• the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:    (3BKT)
  • 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: JohnBateman & MichaelGruninger - ConferenceCall_2011_10_20    (3BKU)
  • 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: ElisaKendall on "Ontology-Related Metadata Standards" - Co-chairs: MichaelGruninger & JohnBateman - ConferenceCall_2011_11_03    (3BKV)

• OntologySummit2008 homepage    (3BKW)
  • OntologySummit2008_Communique    (3BKX)
  • OntologySummit2008/FaceToFaceAgenda & Proceedings    (3BKY)
  • The OOR Project Presentation (delivered at the OntologySummit2008 face-to-face workshop)    (3BKZ)
• [ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)    (3BL0)
• Our key content pages:    (3BL1)
  • OpenOntologyRepository_Scope    (3BL2)
  • OpenOntologyRepository_Organization    (3BL3)
  • OpenOntologyRepository_Process    (3BL4)
  • OpenOntologyRepository_Policy    (3BL5)
  • OpenOntologyRepository_IPR    (3BL6)
  • OpenOntologyRepository_Requirement    (3BL7)
  • OpenOntologyRepository_UseCases    (3BL8)
  • OpenOntologyRepository_Architecture    (3BL9)
  • OpenOntologyRepository_Approach    (3BLA)
  • OpenOntologyRepository_Roadmap    (3BLB)
  • OpenOntologyRepository_Plan    (3BLC)
  • OpenOntologyRepository_Funding    (3BLD)
  • OpenOntologyRepository_ResearchIssues    (3BLE)
  • OpenOntologyRepository_ResearchActivity    (3BLF)
  • OpenOntologyRepository_Development    (3BLG)
  • OpenOntologyRepository_Metadata    (3BLH)
• OOR/ActiveMemberContribution    (3BLI)
• OOR Project site at SemWebCentral - http://oor.semwebcentral.org    (3BLJ)
• Public instances of OOR - http://oor.net    (3BLK)
  • OOR_SandBox - http://oor-03.cim3.net - http://sandbox.oor.net/    (3BLL)
    • see also: OOR_SandBox_Customization    (3BLM)
  • OOR_DevBox - http://oor-05.cim3.net - http://dev.oor.net/    (3BLN)
  • a first OOR Test instance - http://oor-06.cim3.net - http://test-00.oor.net/    (3BLO)
  • SOCoP_OOR - http://oor-04.cim3.net - http://socop.oor.net/ontologies    (3BLP)
  • COLORE_OOR - http://colore.oor.net    (3BLQ)
  • ORNL-DAAC - http://ornl-daac.oor.net    (3BLR)
  • MMI-ORR - http://mmisw.oor.net    (3BLS)
  • NCBO - BioPortal    (3BLT)
    • BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support    (3BLU)
  • NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development    (3BLV)