OOR/ConferenceCall 2011 11 22

OpenOntologyRepository: OOR Development Workshop-VI - Tue 2011_11_22    (2YZ1)

This is our "Getting OOR Development Going - Take VI" workshop which we will devote to the topic of how we should be organized to getting real OOR-related open source software development work going ...    (2Z0X)

Topic: "Getting OOR Development Going - Take VI"    (2Z0Y)

Session Chair: MikeDean    (2Z87)

Conference Call Details:    (2Z88)

• Date: Tuesday, 22-Nov-2011    (2Z89)
• Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC    (2Z8A)
  • ref: World Clock    (2Z8B)
• Expected Call Duration: ~1.5 hours    (2Z8C)

• Dial-in:    (2Z8D)
  • Phone (US): +1 (206) 402-0100 long distance cost will apply)    (2ZCW)
    • ... [ backup nbr: (415) 671-4335 ]    (2Z8E)
  • Skype: joinconference ... (free-of-charge if you connect through skype from your computer/device with an Internet connection)    (2Z8F)
  • when prompted enter PIN: 141184#    (2Z8G)

• In-session chat-room url: http://webconf.soaphub.org/conf/room/oor_20111122    (2Z8H)

• Shared-screen support (VNC session), if applicable, will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/    (2Z8I)
  • view-only password: "ontolog"    (2Z8J)
  • if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts.    (2Z8K)
  • people behind corporate firewalls may have difficulty accessing this. If that is the case, please download the [ slides above] (where applicable) and running them locally. The speaker(s) will prompt you to advance the slides during the talk.    (2Z8L)

• In-session chat-room url: http://webconf.soaphub.org/conf/room/ontolog_20111122    (2Z8M)
  • instructions: once you got access to the page, click on the "settings" button, and identify yourself (by modifying the Name field from "anonymous" to your real name, like "JaneDoe").    (2Z8N)
  • You can indicate that you want to ask a question verbally by clicking on the "hand" button, and wait for the moderator to call on you; or, type and send your question into the chat window at the bottom of the screen.    (2Z8O)
  • thanks to the soaphub.org folks, one can now use a jabber/xmpp client (e.g. gtalk) to join this chatroom. Just add the room as a buddy - (in our case here) ontolog_20111122@soaphub.org ... Handy for mobile devices!    (2Z8P)

• Discussions and Q & A:    (2Z8Q)
  • Nominally, when a presentation is in progress, the moderator will mute everyone, except for the speaker.    (2Z8R)
  • To un-mute, press "*7" ... To mute, press "*6" (please mute your phone, especially if you are in a noisy surrounding, or if you are introducing noise, echoes, etc. into the conference line.)    (2Z8S)
  • we will usually save all questions and discussions till after all presentations are through. You are encouraged to jot down questions onto the chat-area in the mean time (that way, they get documented; and you might even get some answers in the interim, through the chat.)    (2Z8T)
  • During the Q&A / discussion segment (when everyone is muted), If you want to speak or have questions or remarks to make, please raise your hand (virtually) by clicking on the "hand button" (lower right) on the chat session page. You may speak when acknowledged by the session moderator (again, press "*7" on your phone to un-mute). Test your voice and introduce yourself first before proceeding with your remarks, please. (Please remember to click on the "hand button" again (to lower your hand) and press "*6" on your phone to mute yourself after you are done speaking.)    (2Z8U)

• RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the community.)    (2Z8V)

• Please review our Virtual Session Tips and Ground Rules - see: VirtualSpeakerSessionTips    (2Z8W)

• RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.)    (2Z8X)

• This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_11_22    (2Z8Y)

• Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy.    (2Z8Z)

Attendees    (2Z90)

• Attended:    (2Z91)
  • MikeDean (chair)    (2Z93)
  • PeterYim (scribe)    (2Z94)
  • KenBaclawski    (2Z96)
  • ToddSchneider    (2Z97)
  • MichaelGruninger    (2Z98)
  • BrianDavis    (2ZCX)

• Expecting:    (2Z92)
•    (2Z99)
  • ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ...    (2Z9A)

• Regrets:    (2Z9B)
  • LeoObrst    (2Z95)

Agenda Ideas:    (2Z9C)

please insert any additional items below (along with your name for follow-up purposes)    (2Z9D)

• Identifying issues that are holding back the OOR-oss-dev work    (2Z9E)
• Review what it takes to develop upon BioPortal's existing development framework    (2Z9F)
• Refine how we should move development forward from here    (2Z9G)
• Task distribution and getting organized    (2Z9H)
• Action planning (with consensus milestones)    (2Z9I)

• ... (please add to the above)    (2Z9J)

Agenda & Proceedings    (2Z9K)

Archives:    (2Z9L)

• audio recording of the session [ 1:15:41 ; mp3 ; 8.66 MB ]    (2Z9M)
• chat-transcript of this session    (2Z9N)

1. Meeting called to order:    (2Z9O)

• MikeDean takes the chair and welcome everyone    (2Z9P)
• review and adopt agenda    (2Z9Q)
• PeterYim volunteered to take notes    (2Z9R)

2. Roll Call:    (2Z9S)

• see above    (2Z9T)

• welcome and intro of new member(s) (as needed)    (2Z9U)
  • BrianDavis from caBIG's ORWG joined us and made an intro of ORWG and himself    (2ZCY)

3. Status Review and Discussion:    (2Z9V)

• Review and update our "Most Critical Task(s) At Hand" list ... (skipped)    (2Z9W)
  • ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH    (2Z9X)

4. Key items for review and discussion today:    (2Z9Y)

Topic: "Getting OOR Development Going - Take VI"    (2Z9Z)

• identifying issues that are holding back the OOR-dev work    (2ZA0)
  • MikeDean: issues: limited (or no) time and funding    (2ZA1)
  • ToddSchneider: What to code or fix.    (2ZD1)
  • MikeDean: issues: architectural uncertainty (being resolved)    (2ZD2)
  • MichaelGruninger: the current implementation restricts ontologies to be specified in OWL    (2ZD3)
  • PeterYim: being a totally volunteered project does present a challenge    (2ZD4)
  • MikeDean: issues: platform distribution/installation changes (being resolved)    (2ZD5)

• Issues we could discuss at the Nov-29 joint NCBO-OOR session    (2ZA2)
  • MikeDean: status of export/import/upgrade process for NCBO appliance    (2ZA3)
  • MikeDean: availability of Java, Ruby, or other client stubs for invoking BioPortal REST services    (2ZD6)
  • ToddSchneider: BioPortal's Roadmap or priorities    (2ZD7)
  • PeterYim: clearly identify functionalities that either the NCBO or the OOR development team will be pursuing    (2ZD8)
    • MikeDean: federation (BBN is happy to contribute their earlier code)    (2ZD9)
  • MikeDean: which specific "WebTools" package(s) is PaulAlexander using    (2ZDA)
  • PeterYim: I would still hope aligning architecture and API and creating synergies would still be the main focus for that session    (2ZDB)

• Refine how we should move development forward from here    (2ZA4)
  • MikeDean/2011.11.08: suggest starting a wiki page for OOR_DeveloperTools to share some of the experience and provide some consensus on tools to use    (2ZA5)
  • KenBaclawski/2011.11.08: it would be helpful to find out from PaulAlexander which specific "WebTools" package(s) he is using ... question for the Nov-29 session (if not sooner)    (2ZA6)

• Task distribution and getting organized - (deferred)    (2ZA7)
  • ...    (2ZA8)

• Action planning (with consensus milestones)    (2ZA9)
  • [2011.11.08] MikeDean will look through the current BioPortal project to see what they are using; which will eventually get us to a reference developer platform for OOR developers    (2ZAA)
  • [2011.11.08] Develop a "guideline on how to develop a language module" and the API for language module developers to plug into [suggested by Eric - Ken & Todd to work on]    (2ZAB)
  • [2011.11.08] Preparation for the Nov-29 session: all developers are requested to have reviewed the BioPortal "tab" development criteria, and hopefully, has done a "hello world" tab, prior to this session.    (2ZAC)
    • ref. details at: at: http://palexander.posterous.com/extending-bioportals-rails-ui    (2ZAD)

• ref. also: discussion as captured in the in-session chat    (2ZAE)

5. Getting Organized:    (2ZAH)

• (discussion deferred)    (2ZDC)

6. Action items:    (2ZAI)

• [2011.11.22]: Peter to start a Nov-29 preparation email thread with Ken, Todd, Ray et al. to tie down the agenda for the 11/29 session    (2ZDD)

• [2011.11.22]: Brian will post wiki link to HaroldSolbrig's metadata cross-walk work ... and Michael will invite Harold to present that work on Dec-13 for us    (2ZDE)

7. Any Other Business:    (2ZAO)

8. Schedule Next Meeting & Adjourn:    (2ZAP)

• Next Meetings:    (2ZAQ)
  • 2011_11_29: Joint OOR-NCBO "Architecture-API" session - co-chair: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_11_29    (2ZAR)
  • 2011_12_06: regular OOR team meeting - OOR/ConferenceCall_2011_12_06    (2ZDF)
  • 2011_12_13: OOR-metadata workshop take-V - chair: MichaelGruninger - OOR/ConferenceCall_2011_12_13    (2ZDG)

• Call adjourned at: 9:51 am PST    (2ZAS)

 --
 notes taken by: PeterYim / 2011.11.08-10:03am PST
 All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.    (2ZAT)

---

Resources    (2ZAU)

• homepage - OpenOntologyRepository - http://OpenOntologyRepository.org    (2ZAV)
• OOR Charter - To promote the global use and sharing of ontologies by: 1. establishing a hosted registry-repository; 2. enabling and facilitating open, federated, collaborative ontology repositories; 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories.    (2ZAW)
• "Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed"    (2ZAX)
• Team mailling list:    (2ZAY)
  • OOR-Team discussion: [ oor-forum ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/    (2ZAZ)
  • OOR-Users discussion and support: [ oor-users ]''' message archives - http://ontolog.cim3.net/forum/oor-users/    (2ZB0)
  • Developers mailling list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/    (2ZB1)
• proceedings of our previous meetings, panel discussions and workshops    (2ZB2)
• the Joint OOR-OntologySummit2008 Panel Discussions:    (2ZB3)
  • 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28    (2ZB4)
  • 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, JohnLMcCarthy, KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27    (2ZB5)
  • 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03    (2ZB6)
  • 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy & ElisaKendall - ConferenceCall_2008_04_10    (2ZB7)
• the OOR Development panel sessions:    (2ZB8)
  • 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen, LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22    (2ZB9)
  • 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: ToddSchneider; Panelists: MarkMusen, NatashaNoy, MikeDean, PaulBuitelaar / AndreasHarth, MathieuDaquin, KenBaclawski, MichaelGruninger - ConferenceCall_2009_02_19    (2ZBA)
  • 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: MarkMusen - Panelists: TaniaTudorache, TimRedmond, NatashaNoy - ConferenceCall_2009_07_16    (2ZBB)
  • 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: NatashaNoy - Panelists: CarlosRueda, PaulAlexander, JohnGraybeal, MikeDean, StephenGranite, AlexGarcia, KenBaclawski - ConferenceCall_2009_07_30    (2ZBC)
  • 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: MikeDean - Panelists: JimChatigny, MichaelGruninger, KenBaclawski, NatashaNoy - OOR/ConferenceCall_2010_02_19    (2ZBD)
  • 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: KenBaclawski & ToddSchneider - Panelists: ToddSchneider, MatthewHettinger, KenBaclawski and MaximoGurmendez - ConferenceCall_2010_04_01    (2ZBE)
  • 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: JohnSowa - Panelists: JohnBateman-TillMossakowski, MichaelGruninger, CameronRoss, AdamPease, PatHayes - ConferenceCall_2010_09_10    (2ZBF)
  • 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: ToddSchneider & MichaelGruninger - Panelists: ToddSchneider, MikeDean, NatashaNoy, ImmanuelNormann, KenBaclawski, MichaelGruninger - OOR/ConferenceCall_2010_09_17    (2ZBG)
  • 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15    (2ZBH)
  • 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: KenBaclawski & MichaelGruninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, EricChan - OOR/ConferenceCall_2010_11_19    (2ZBI)
  • 2011_03_04 - Friday: OOR "Architecture & API Specification Development Workshop-I" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_04    (2ZBJ)
  • 2011_03_11 - Friday: OOR - "Architecture & API Specification Development Workshop-II" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_11    (2ZBK)
  • 2011_03_18 - Friday: OOR Metadata Workshop-I - Chair: MichaelGruninger - OOR/ConferenceCall_2011_03_18    (2ZBL)
  • 2011_03_25 - Friday: OOR - "Architecture & API Specification Development Workshop-III" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_03_25    (2ZBM)
  • 2011_04_22 - Friday: OOR - "Architecture & API Specification Development Workshop-IV" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_04_22    (2ZBN)
  • 2011_05_13 - Friday: OOR Metadata Workshop-II - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_13    (2ZBO)
  • 2011_05_20 - Friday: OOR - "Architecture & API Specification Development Workshop-V" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_05_20    (2ZBP)
  • 2011_05_27 - Friday: OOR Metadata Workshop-III - Chair: MichaelGruninger - OOR/ConferenceCall_2011_05_27    (2ZBQ)
  • 2011_06_17 - Friday: OOR - "Architecture & API Specification Development Workshop-VI" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_06_17    (2ZBR)
  • 2011_09_13 - Tuesday: Joint NCBO-OOR Team Meeting - "Kicking-off the Next Phase of Collaboration" - Co-chairs: RayFergerson & PeterYim - OOR/ConferenceCall_2011_09_13    (2ZBS)
  • 2011_09_20 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_09_20    (2ZBT)
  • 2011_10_11 - Tuesday: OOR - "Architecture & API Specification Development Workshop-VII" - Co-chairs: KenBaclawski & ToddSchneider - OOR/ConferenceCall_2011_10_11    (2ZBU)
  • 2011_10_18 - Friday: OOR Metadata Workshop-IV - Chair: MichaelGruninger - OOR/ConferenceCall_2011_10_18    (2ZBV)
  • 2011_11_08 - Tuesday: "Getting OOR Development Going - Take-V" Workshop - Chair: MikeDean - "Getting OOR Development going, on Eclipse?" - OOR/ConferenceCall_2011_11_08    (2ZDO)
  • 2011_11_22 - Tuesday: "Getting OOR Development Going - Take-VI" Workshop - Chair: MikeDean - OOR/ConferenceCall_2011_11_22    (2ZDP)

• the OOR-IPR mini-series:    (2ZBW)
  • 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: GeorgeStrawn - Chair: PeterYim - Panelists: JamieClark, JohnWilbanks, BrucePerens - ConferenceCall_2010_09_09    (2ZBX)
  • 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: MarkMusen - Panelists: CameronRoss, AlanRector, JohnSowa, BrucePerens, JohnWilbanks, PeterYim - ConferenceCall_2010_09_16    (2ZBY)
  • 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: LeoObrst - Panelists: PeterYim, MikeDean, BrucePerens, JamieClark - ConferenceCall_2010_09_30    (2ZBZ)
• the Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series:    (2ZX9)
  • 2011_10_20 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-1: Introducing the ISO NP 17347 "Ontology Integration and Interoperability (OntoIOp)" Standardization Effort - Co-chairs: JohnBateman & MichaelGruninger - ConferenceCall_2011_10_20    (2ZC0)
  • 2011_11_03 - Thursday: Joint IAOA-OOR-Ontolog "Ontologies and Standards" mini-series session-2: Invited Speaker: ElisaKendall on "Ontology-Related Metadata Standards" - Co-chairs: MichaelGruninger & JohnBateman - ConferenceCall_2011_11_03    (2ZC1)

• OntologySummit2008 homepage    (2ZC2)
  • OntologySummit2008_Communique    (2ZC3)
  • OntologySummit2008/FaceToFaceAgenda & Proceedings    (2ZC4)
  • The OOR Project Presentation (delivered at the OntologySummit2008 face-to-face workshop)    (2ZC5)
• [ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008)    (2ZC6)
• Our key content pages:    (2ZC7)
  • OpenOntologyRepository_Scope    (2ZC8)
  • OpenOntologyRepository_Organization    (2ZC9)
  • OpenOntologyRepository_Process    (2ZCA)
  • OpenOntologyRepository_Policy    (2ZCB)
  • OpenOntologyRepository_IPR    (2ZCC)
  • OpenOntologyRepository_Requirement    (2ZCD)
  • OpenOntologyRepository_UseCases    (2ZCE)
  • OpenOntologyRepository_Architecture    (2ZCF)
  • OpenOntologyRepository_Approach    (2ZCG)
  • OpenOntologyRepository_Roadmap    (2ZCH)
  • OpenOntologyRepository_Plan    (2ZCI)
  • OpenOntologyRepository_Funding    (2ZCJ)
  • OpenOntologyRepository_ResearchIssues    (2ZCK)
  • OpenOntologyRepository_ResearchActivity    (2ZCL)
  • OpenOntologyRepository_Development    (2ZCM)
  • OpenOntologyRepository_Metadata    (2ZCN)
• OOR/ActiveMemberContribution    (2ZCO)
• OOR Project site at SemWebCentral - http://oor.semwebcentral.org    (2ZCP)
• Public instances of OOR - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies) ... we are in process to standing up:    (2ZCQ)
  • OOR_SandBox - http://oor-03.cim3.net - http://sandbox.oor.net/    (2ZCR)
  • OOR_DevBox - http://oor-01.cim3.net - http://dev.oor.net/    (2ZCS)
  • NCBO - BioPortal    (2ZCT)
    • BioPortal's [bioontology-support] mailing list - see: https://mailman.stanford.edu/mailman/listinfo/bioontology-support    (2ZCU)
  • NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development    (2ZCV)