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Re: [oor-dev] OOR-sandbox admin portal access [was - Re: browsingerrors

To: OpenOntologyRepository-development <oor-dev@xxxxxxxxxxxxxxxx>
From: Mike Dean <mdean@xxxxxxx>
Date: Thu, 28 Jan 2010 00:23:21 -0500
Message-id: <6E879394-B9F1-4DA1-93EE-C8BDA0703AA0@xxxxxxx>
> UI code has been updated on oor-01f.cim3.net.    (01)

Tejas,    (02)

Exploring now seems to work well, and I was also able to add bidirectional 
mappings between a couple geospatial ontologies (replicating everything I'd 
previously added to the oor-01.cim3.net sandbox).    (03)

Thanks again to you and Paul.    (04)

        Mike    (05)


On Wed, Jan 27, 2010 at 7:26 PM, Paul R Alexander
> 
> <palexander@xxxxxxxxxxxx> wrote:
>> Mike,
>> 
>> This is due to some recent changes on the BioPortal Core which haven't been
>> deployed on OOR's side. I patched the OOR branch of the UI code to handle
>> both the new and old data and did some other minor merges so if the OOR code
>> is updated again everything should be good.
>> 
>> Paul
>> 
>> 
>> On 1/26/10 9:38 PM, Mike Dean wrote:
>> 
>> Peter and Mike please confirm you can access Admin portal @
>> http://oor-01f.cim3.net:8080/bioportal_admin/login.jsf
>> 
>> 
>> I'm now able to login.
>> 
>> I see that the ontologies parsed at 11:30 and that Search now works!
>> However, we're now getting exceptions from the Explore links in the Browse
>> window, e.g. [1].
>> 
>> Thanks to Paul, Misha, Tejas, and Jim for your help.
>> 
>>      Mike
>> 
>> [1] http://oor-01f.cim3.net/visualize/10003
>> 
>> 
>> 
>> 
>> On Tue, Jan 26, 2010 at 10:53 PM, Jim Chatigny <jchatign@xxxxxxx> wrote:
>> 
>> 
>> In case it helps, here are my notes from installing the admin webapp. There
>> were a couple of issues: (a) the application id has to be set properly in
>> build.xml; and (b) there was a missing jar file. I seem to recall one or
>> another may have resulted in an "invalid credentials" error message.
>> 
>> In any case, the procedure ultimately worked OK for me.
>> 
>> Jim
>> 
>> 
>> 
>> -----Original Message-----
>> From: Peter Yim [mailto:peter.yim@xxxxxxxx]
>> Sent: Tuesday, January 26, 2010 5:31 PM
>> To: Tejas Parikh
>> Cc: oor-dev
>> Subject: [oor-dev] OOR-sandbox admin portal access [was - Re:
>> browsingerrors in new sandbox]
>> 
>> 
>> Thanks, Tejas ...
>> 
>> ... I still can't get in (to the admin portal) though.
>> 
>> Guess we need help from the NCBO/BioPortal folks here ... Paul? Misha?
>> 
>> Thanks in advance.  =ppy
>> --
>> 
>> 
>> On Tue, Jan 26, 2010 at 7:20 PM, Tejas Parikh
>> <tejas@xxxxxxxxxxxxxxx> wrote:
>> 
>> 
>> Peter,
>> 
>> The steps to make user account an admin account do not seem to be
>> right. I tried making my account an admin account and it
>> 
>> 
>> did not work.
>> 
>> 
>> I used following steps:
>> bioportal databse, ncbo.l.role table, what is the id for
>> ROLE_ADMINISTRATOR (e.g., 2824). Then, look in the
>> 
>> 
>> ncbo_user table for
>> 
>> 
>> your user (firstname and lastname col), and write down the user id
>> from the id column (e.g. 38312). Then go to ncbo_user_role
>> 
>> 
>> table and
>> 
>> 
>> edit the row that contains your user id in the user_id
>> 
>> 
>> column, and put
>> 
>> 
>> in the role_id column the administrator role id. E.g.
>> (user_id:38312,role_id:2824). Restart the backend and try
>> 
>> 
>> to log into
>> 
>> 
>> the bioportal_admin
>> 
>> 
>> Ken Baclawski, Mike Gruninger and Leo Obrst have not
>> 
>> 
>> created account
>> 
>> 
>> on oor-01f.cim3.net sandbox yet. Once they create their
>> 
>> 
>> accounts I can
>> 
>> 
>> make them admins.
>> 
>> 
>> 
>> --Tejas
>> 
>> 
>> 
>> 
>> On Tue, Jan 26, 2010 at 10:15 PM, Peter Yim <peter.yim@xxxxxxxx>
>> wrote:
>> 
>> 
>> Tejas,
>> 
>> Thank you very much.
>> 
>> Have you created accounts for me and Mike, or do we have to create
>> our own. If the latter, please advise how.
>> 
>> I actually already have an account ( username = PeterYim)
>> 
>> 
>> created on
>> 
>> 
>> oor-01, and it still works on oor-01f. However, when I use
>> 
>> 
>> that set
>> 
>> 
>> of credentials at the admin login, I am getting a "Invalid
>> credentials supplied" error. ... Any idea?
>> 
>> Also, please provide Ken Baclawski, Mike Gruninger and Leo
>> 
>> 
>> Obrst with
>> 
>> 
>> access the admin portal as well.
>> 
>> Thanks & regards.  =ppy
>> --
>> 
>> 
>> On Tue, Jan 26, 2010 at 7:03 PM, Tejas Parikh
>> 
>> 
>> <tejas@xxxxxxxxxxxxxxx>
>> 
>> 
>> wrote:
>> 
>> 
>> Enabled ontology parser.
>> 
>> # Ontology Parse Scheduler properties
>> # Enable/Disable scheduler service flag
>> ontology.parse.scheduler.enabled=true
>> # Scheduler cron expression
>> # Fire once every hour, at 30 past the hour: 0 30 * * * ? *
>> ontology.parse.scheduler.cronexpression=0 30 * * * ? *
>> 
>> Also installed BioPortal Admin. It can be accessed at
>> http://oor-01f.cim3.net:8080/bioportal_admin/login.jsf
>> 
>> 
>> and made Mike
>> 
>> 
>> Dean and Peter Yim administrators using the steps given in the
>> install guide.
>> 
>> Mike / Peter can you try to login and confirm that you
>> 
>> 
>> are able to
>> 
>> 
>> access the bioportal admin portal.
>> 
>> Thanks,
>> --Tejas
>> 
>> 
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> 
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