OOR sandbox @ oor-01f.cim3.net has been updated based on Paul's feedback (01)
--Tejas (02)
On Mon, Jan 25, 2010 at 10:03 PM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx> wrote:
> I will go ahead and update the code for BioPortal UI on OOR sandbox.
>
> --Tejas
>
>
>
> On Mon, Jan 25, 2010 at 8:45 PM, Paul R Alexander
> <palexander@xxxxxxxxxxxx> wrote:
>> Mike,
>>
>> This was a bug that had been fixed in the BioPortal UI trunk but not the
>> branch that OOR has deployed. I just merged the changes from the trunk to
>> the OOR branch and if the code is updated this should go away.
>>
>> Note: There are some config changes in the environment.rb file that will
>> need to be made for this update to work.
>>
>> Please let me know if you have any problems or questions.
>>
>> Paul
>>
>> On 1/24/10 9:04 AM, Mike Dean wrote:
>>
>> I'm often but erratically getting the error below when I browse specific
>> ontologies (i.e. click Browse and then the ontology name or abbreviation,
>> e.g. [1]) using the new sandbox.
>>
>> I originally thought this was consistently happening with several small
>> (less than 50K byte) ontologies/vocabularies I loaded on Friday, but it now
>> seems to happen (somewhat intermittently) with other ontologies as well.
>> Logging-in/out, restarting Safari, or switching to Firefox doesn't seem to
>> make a significant difference.
>>
>> Mike
>>
>> [1] http://oor-01f.cim3.net/ontologies/10018
>>
>> [2] http://oor-01f.cim3.net
>>
>>
>> ArgumentError in Ontologies#show
>>
>> Showing ontologies/show.html.erb where line #522 raised:
>>
>> undefined class/module OntologyMetricsWrapper
>> Extracted source (around line #522):
>>
>> 519: for the most recent version are reflected.
>> 520: <%= link_to "See metrics descriptions",
>> "http://www.bioontology.org/wiki/index.php/Ontology_Metrics"; %>
>> 521: </p>
>> 522: <% if @ontology.metrics.empty? %>
>> 523: <h2 style="padding-left: 1em;">We have not yet calculated
>metrics for
>> this ontology.</h2>
>> 524: <% else %>
>> 525: <table class="form">
>>
>> RAILS_ROOT: /usr/local/bioportal/bioportalui_oor
>>
>> Application Trace | Framework Trace | Full Trace
>> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:255:in
>> `load'
>> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:255:in
>> `get'
>> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:878:in
>> `with_server'
>> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:251:in
>> `get'
>> app/models/data_access.rb:168:in `getOntologyMetrics'
>> app/models/ontology_wrapper.rb:160:in `metrics'
>> app/views/ontologies/show.html.erb:522:in
>> `_run_erb_47app47views47ontologies47show46html46erb'
>> app/controllers/ontologies_controller.rb:66:in `show'
>> /usr/bin/mongrel_rails:19:in `load'
>> /usr/bin/mongrel_rails:19
>>
>> Request
>>
>> Parameters:
>>
>> {"id"=>"10018"}
>> Show session dump
>>
>> Response
>>
>> Headers:
>>
>> {"cookie"=>[],
>> "Cache-Control"=>"no-cache"}
>>
>>
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>>
> (03)
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