I will go ahead and update the code for BioPortal UI on OOR sandbox. (01)
--Tejas (02)
On Mon, Jan 25, 2010 at 8:45 PM, Paul R Alexander
<palexander@xxxxxxxxxxxx> wrote:
> Mike,
>
> This was a bug that had been fixed in the BioPortal UI trunk but not the
> branch that OOR has deployed. I just merged the changes from the trunk to
> the OOR branch and if the code is updated this should go away.
>
> Note: There are some config changes in the environment.rb file that will
> need to be made for this update to work.
>
> Please let me know if you have any problems or questions.
>
> Paul
>
> On 1/24/10 9:04 AM, Mike Dean wrote:
>
> I'm often but erratically getting the error below when I browse specific
> ontologies (i.e. click Browse and then the ontology name or abbreviation,
> e.g. [1]) using the new sandbox.
>
> I originally thought this was consistently happening with several small
> (less than 50K byte) ontologies/vocabularies I loaded on Friday, but it now
> seems to happen (somewhat intermittently) with other ontologies as well.
> Logging-in/out, restarting Safari, or switching to Firefox doesn't seem to
> make a significant difference.
>
> Mike
>
> [1] http://oor-01f.cim3.net/ontologies/10018
>
> [2] http://oor-01f.cim3.net
>
>
> ArgumentError in Ontologies#show
>
> Showing ontologies/show.html.erb where line #522 raised:
>
> undefined class/module OntologyMetricsWrapper
> Extracted source (around line #522):
>
> 519: for the most recent version are reflected.
> 520: <%= link_to "See metrics descriptions",
> "http://www.bioontology.org/wiki/index.php/Ontology_Metrics"; %>
> 521: </p>
> 522: <% if @ontology.metrics.empty? %>
> 523: <h2 style="padding-left: 1em;">We have not yet calculated
>metrics for
> this ontology.</h2>
> 524: <% else %>
> 525: <table class="form">
>
> RAILS_ROOT: /usr/local/bioportal/bioportalui_oor
>
> Application Trace | Framework Trace | Full Trace
> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:255:in
> `load'
> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:255:in
> `get'
> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:878:in
> `with_server'
> /usr/lib64/ruby/gems/1.8/gems/memcache-client-1.7.7/lib/memcache.rb:251:in
> `get'
> app/models/data_access.rb:168:in `getOntologyMetrics'
> app/models/ontology_wrapper.rb:160:in `metrics'
> app/views/ontologies/show.html.erb:522:in
> `_run_erb_47app47views47ontologies47show46html46erb'
> app/controllers/ontologies_controller.rb:66:in `show'
> /usr/bin/mongrel_rails:19:in `load'
> /usr/bin/mongrel_rails:19
>
> Request
>
> Parameters:
>
> {"id"=>"10018"}
> Show session dump
>
> Response
>
> Headers:
>
> {"cookie"=>[],
> "Cache-Control"=>"no-cache"}
>
>
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> (03)
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