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Re: [oor-forum] [bioportal-announce] BioPortal 3.2 Released

To: Peter Yim <peter.yim@xxxxxxxx>
Cc: OpenOntologyRepository-discussion <oor-forum@xxxxxxxxxxxxxxxx>
From: Trish Whetzel <whetzel@xxxxxxxxxxxx>
Date: Wed, 7 Sep 2011 15:24:06 -0700
Message-id: <96375A53-4EFD-4AAE-BC75-82893491C010@xxxxxxxxxxxx>
Sure, Ray can provide more details on those items.    (01)

Trish     (02)


On Sep 7, 2011, at 9:23 AM, Peter Yim wrote:    (03)

> Thank you, Trish.
> 
> Maybe we could get some pointers from you guys, at next Tuesday's
> (Sep-13) joint NCBO-OOR team session, how we can best keep our OOR
> instance up-to-date (patches for bug fixes especially) in between your
> vm image releases.
> 
> Regards.  =ppy
> --
> 
> 
> On Wed, Sep 7, 2011 at 9:08 AM, Trish Whetzel <whetzel@xxxxxxxxxxxx> wrote:
>> Dear Peter,
>> 
>> The VM 0.3 version corresponds to BioPortal 3.1. The release cycle for VM's 
>is every 4-6 months. I'll check whether that duration will be shortened based 
>on what features are planned in the coming months.
>> 
>> Trish
> 
> 
>> On Sep 6, 2011, at 5:49 PM, Peter Yim wrote:
>> 
>>> This is great, Trish. Congrats to your entire team on this new release!
>>> 
>>> Is the <ncbo-appliance-0.3.ova> vm "appliance" an image of this
>>> BioPortal 3.2 version, or is that of a previous version? ... If it's
>>> the latter, which version? and, do you have an ETA for the vm image
>>> for BioPortal 3.2?
>>> 
>>> Thanks & regards.  =ppy
>>> --
> 
> 
>>> On Tue, Sep 6, 2011 at 5:36 PM, Trish Whetzel <whetzel@xxxxxxxxxxxx> wrote:
>>>> The National Center for Biomedical Ontology is pleased to announce the
>>>> release of BioPortal 3.2.  New features include updates to the Web 
>interface
>>>> and Web services:
>>>> 
>>>> Added Ontology Recommender feature,
>>>> http://bioportal.bioontology.org/recommender
>>>> Added support for access control for viewing ontologies
>>>> Added link to subscribe to BioPortal Notes emails
>>>> Synchronized “Jump To” feature with ontology parsing and display
>>>> Added documentation on Ontology Groups
>>>> Annotator Web service – disabled use of “longest only” parameter when also
>>>> selecting “ontologies to expand” parameter
>>>> Removed the metric "Number of classes without an author"
>>>> Handling of obsolete terms, part 1 – term name is grayed out and
>>>> <is_obsolete> element is returned in Web service response for obsolete 
>terms
>>>> from OBO and RRF ontologies. This feature will be extended to cover OWL
>>>> ontologies in a subsequent release.
>>>> Bug Fix
>>>> 
>>>> Fixed calculation of “Classes with no definition” metric
>>>> Added re-direct from old BioPortal URL format to new URL format to provide
>>>> working links from archived search results
>>>> 
>>>> Firefox Extension for NCBO API Key:
>>>> To make it easier to test Web service calls from your browser, we have
>>>> released the NCBO API Key Firefox Extension. This extension will
>>>> automatically add your API Key to NCBO REST URLs any time you visit them in
>>>> Firefox. The extension is available at Mozilla's Add-On site. To use the
>>>> extension, follow the installation directions, restart Firefox, and add 
>your
>>>> API Key into the “Options” dialog menu on the Add-Ons management screen.
>>>> After that, the extension will automatically append your stored API Key any
>>>> time you visit http://rest.bioontology.org.
>>>> Upcoming software license change:
>>>> The next release of NCBO software will be under the two-clause BSD license
>>>> rather than under the currently used three-clause BSD license. This change
>>>> should not affect anyone’s use of NCBO software and this change is to a 
>less
>>>> restrictive license. More information about these licenses is available at
>>>> the site: http://www.opensource.org/licenses. Please contact
>>>> support@xxxxxxxxxxxxxxx with any questions concerning this change.
>>>> 
>>>> Trish Whetzel, PhD
>>>> Outreach Coordinator
>>>> The National Center for Biomedical Ontology
>>>> Ph: 650-721-2378
>>>> whetzel@xxxxxxxxxxxx
>>>> http://www.bioontology.org
>>>> http://twitter.com/#!/bioontology
>>>> 
>http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153
>>>> 
>>>> _______________________________________________
>>>> bioportal-announce mailing list
>>>> bioportal-announce@xxxxxxxxxxxxxxxxxx
>>>> https://mailman.stanford.edu/mailman/listinfo/bioportal-announce    (04)


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