oor-forum
[Top] [All Lists]

Re: [oor-forum] [bioportal-announce] BioPortal 3.2 Released

To: Trish Whetzel <whetzel@xxxxxxxxxxxx>
Cc: OpenOntologyRepository-discussion <oor-forum@xxxxxxxxxxxxxxxx>
From: Peter Yim <peter.yim@xxxxxxxx>
Date: Wed, 7 Sep 2011 09:23:01 -0700
Message-id: <CAGdcwD3aMOnREDYDT4eWegGo6yAzKUV1Q6OhcPNkbnDVzxWkGg@xxxxxxxxxxxxxx>
Thank you, Trish.    (01)

Maybe we could get some pointers from you guys, at next Tuesday's
(Sep-13) joint NCBO-OOR team session, how we can best keep our OOR
instance up-to-date (patches for bug fixes especially) in between your
vm image releases.    (02)

Regards.  =ppy
--    (03)


On Wed, Sep 7, 2011 at 9:08 AM, Trish Whetzel <whetzel@xxxxxxxxxxxx> wrote:
> Dear Peter,
>
> The VM 0.3 version corresponds to BioPortal 3.1. The release cycle for VM's 
>is every 4-6 months. I'll check whether that duration will be shortened based 
>on what features are planned in the coming months.
>
> Trish    (04)


> On Sep 6, 2011, at 5:49 PM, Peter Yim wrote:
>
>> This is great, Trish. Congrats to your entire team on this new release!
>>
>> Is the <ncbo-appliance-0.3.ova> vm "appliance" an image of this
>> BioPortal 3.2 version, or is that of a previous version? ... If it's
>> the latter, which version? and, do you have an ETA for the vm image
>> for BioPortal 3.2?
>>
>> Thanks & regards.  =ppy
>> --    (05)


>> On Tue, Sep 6, 2011 at 5:36 PM, Trish Whetzel <whetzel@xxxxxxxxxxxx> wrote:
>>> The National Center for Biomedical Ontology is pleased to announce the
>>> release of BioPortal 3.2.  New features include updates to the Web interface
>>> and Web services:
>>>
>>> Added Ontology Recommender feature,
>>> http://bioportal.bioontology.org/recommender
>>> Added support for access control for viewing ontologies
>>> Added link to subscribe to BioPortal Notes emails
>>> Synchronized “Jump To” feature with ontology parsing and display
>>> Added documentation on Ontology Groups
>>> Annotator Web service – disabled use of “longest only” parameter when also
>>> selecting “ontologies to expand” parameter
>>> Removed the metric "Number of classes without an author"
>>> Handling of obsolete terms, part 1 – term name is grayed out and
>>> <is_obsolete> element is returned in Web service response for obsolete terms
>>> from OBO and RRF ontologies. This feature will be extended to cover OWL
>>> ontologies in a subsequent release.
>>> Bug Fix
>>>
>>> Fixed calculation of “Classes with no definition” metric
>>> Added re-direct from old BioPortal URL format to new URL format to provide
>>> working links from archived search results
>>>
>>> Firefox Extension for NCBO API Key:
>>> To make it easier to test Web service calls from your browser, we have
>>> released the NCBO API Key Firefox Extension. This extension will
>>> automatically add your API Key to NCBO REST URLs any time you visit them in
>>> Firefox. The extension is available at Mozilla's Add-On site. To use the
>>> extension, follow the installation directions, restart Firefox, and add your
>>> API Key into the “Options” dialog menu on the Add-Ons management screen.
>>> After that, the extension will automatically append your stored API Key any
>>> time you visit http://rest.bioontology.org.
>>> Upcoming software license change:
>>> The next release of NCBO software will be under the two-clause BSD license
>>> rather than under the currently used three-clause BSD license. This change
>>> should not affect anyone’s use of NCBO software and this change is to a less
>>> restrictive license. More information about these licenses is available at
>>> the site: http://www.opensource.org/licenses. Please contact
>>> support@xxxxxxxxxxxxxxx with any questions concerning this change.
>>>
>>> Trish Whetzel, PhD
>>> Outreach Coordinator
>>> The National Center for Biomedical Ontology
>>> Ph: 650-721-2378
>>> whetzel@xxxxxxxxxxxx
>>> http://www.bioontology.org
>>> http://twitter.com/#!/bioontology
>>> 
>http://www.facebook.com/pages/National-Center-for-Biomedical-Ontology/127444774011153
>>>
>>> _______________________________________________
>>> bioportal-announce mailing list
>>> bioportal-announce@xxxxxxxxxxxxxxxxxx
>>> https://mailman.stanford.edu/mailman/listinfo/bioportal-announce    (06)

_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-forum/  
Subscribe: mailto:oor-forum-join@xxxxxxxxxxxxxxxx 
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-forum/  
Shared Files: http://ontolog.cim3.net/file/work/OOR/ 
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository     (07)
<Prev in Thread] Current Thread [Next in Thread>