Thank you very much, Ray ... the information is most helpful (for our
planning purposes.) (01)
The timing is great! We (led by MikeDean) are planning on a
"hackathon" for OntologySummit2013 (revolving around evaluation tools
in ontology software environments,) which is likely to happen in the
late-March, or April time-frame. (02)
Can you keep us posted (ref. the progress on the publication and
testing) on the new API. I am almost certain something synergistic can
come out of the exercise, if we try to coordinate things (BioPortal
and OOR API work) a bit, and keep each other apprised and in sync. (03)
... any sneak peek on your pre-published work-in-progress would
probably be helpful too. (04)
Thanks & regards. =ppy
-- (05)
On Mon, Feb 11, 2013 at 10:58 AM, Ray Fergerson
<ray.fergerson@xxxxxxxxxxxx> wrote:
> Peter,
>
> There will be a VM release in March. We have no public docs on the revised
> API yet because it is not usable yet. It is similar in functionality to
> the current API, we have just revised the call structure and return values
> to be much more regular and straightforward. We expect a public beta for
> the API in early April.
>
> Ray (06)
> -----Original Message-----
> From: peter.yim@xxxxxxxxx [mailto:peter.yim@xxxxxxxxx] On Behalf Of Peter
> Yim
> Sent: Wednesday, February 06, 2013 11:12 AM
> To: Ray Fergerson
> Cc: OpenOntologyRepository-discussion
> Subject: Fwd: [bioportal-announce] Announcing BioPortal Release 3.12
>
> Thanks you, Ray ... Congratulations! Kudos to you and the entire BioPortal
> team.
>
> Would you kindly provide us a link to the revised BioPortal API.
>
> Can you also tell us, what is the BioPortal version in the ncbo-appliance
> now, and when is the next ncbo-appliance version likely to be released
> (and what BioPortal version is expected in that.)
>
> Fyi, folks (from the OOR team) ... please note the announcement (below.)
>
> Best. =ppy
> -- (07)
> ---------- Forwarded message ----------
> From: Ray Fergerson <ray.fergerson@xxxxxxxxxxxx>
> Date: Wed, Feb 6, 2013 at 10:46 AM
> Subject: [bioportal-announce] Announcing BioPortal Release 3.12
> To: announce@xxxxxxxxxxxxxxx
>
>
> We are happy to announce the release of BioPortal 3.12.
>
>
>
> Our development team remains primarily focused on replacing the BioPortal
> backend infrastructure with an RDF triple store and revising the BioPortal
> API. Little of this infrastructure work is visible yet but it will become
> more so in the coming months. For now we continue with small monthly
> releases on the current system infrastructure.
> These releases are limited mostly to improvements to the visualization
> system (BioMixer) and small bug fixes.
>
>
>
> The notable changes since the last announced release are:
>
> - Implemented the display of the OBO part-of relationship in
> the term neighborhood visualization.
>
> - Improved some default layouts in the visualization system.
>
> - Updated automated mappings for all ontologies.
>
> - Regenerated the annotator hierarchy database. The versions
> of ontologies in this database are now much more current.
>
> - Implemented support for federated queries in the BioPortal
> SPARQL endpoint.
>
> - Moved the mappings from the BioPortal endpoint into a
> separate public endpoint. This change allows us to update automated
> mappings more cleanly.
>
> - Added the following resources to the Resource Index. All of
> these resources are the results of our collaboration with the Neuroscience
> Information Framework (NIF) group.
>
> o NIF PubMed Health: Tests
>
> o NIF Drug Related Gene Database
>
> o NIF Gemma
>
> o NIF Integrated Disease View
>
> - Fixed "Maximum Depth" metric for a number of ontologies.
> Was incorrectly displaying "1" in some cases.
>
> - Fixed web service failure when attempting to retrieve all
> concepts from several ontologies.
>
> - Fixed annotator to return all ancestor terms. Was missing
> some ancestors for some ontologies.
>
> - Fixed Search to work correctly in MeSH.
>
> - Fixed problem with SPARQL query to BioPortal endpoint on
> queries that include ORDER and LIMIT clauses.
>
>
> _______________________________________________
> bioportal-announce mailing list
> bioportal-announce@xxxxxxxxxxxxxxxxxx
> https://mailman.stanford.edu/mailman/listinfo/bioportal-announce (08)
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