Peter, (01)
There will be a VM release in March. We have no public docs on the revised
API yet because it is not usable yet. It is similar in functionality to
the current API, we have just revised the call structure and return values
to be much more regular and straightforward. We expect a public beta for
the API in early April. (02)
Ray (03)
-----Original Message-----
From: peter.yim@xxxxxxxxx [mailto:peter.yim@xxxxxxxxx] On Behalf Of Peter
Yim
Sent: Wednesday, February 06, 2013 11:12 AM
To: Ray Fergerson
Cc: OpenOntologyRepository-discussion
Subject: Fwd: [bioportal-announce] Announcing BioPortal Release 3.12 (04)
Thanks you, Ray ... Congratulations! Kudos to you and the entire BioPortal
team. (05)
Would you kindly provide us a link to the revised BioPortal API. (06)
Can you also tell us, what is the BioPortal version in the ncbo-appliance
now, and when is the next ncbo-appliance version likely to be released
(and what BioPortal version is expected in that.) (07)
Fyi, folks (from the OOR team) ... please note the announcement (below.) (08)
Best. =ppy
-- (09)
---------- Forwarded message ----------
From: Ray Fergerson <ray.fergerson@xxxxxxxxxxxx>
Date: Wed, Feb 6, 2013 at 10:46 AM
Subject: [bioportal-announce] Announcing BioPortal Release 3.12
To: announce@xxxxxxxxxxxxxxx (010)
We are happy to announce the release of BioPortal 3.12. (011)
Our development team remains primarily focused on replacing the BioPortal
backend infrastructure with an RDF triple store and revising the BioPortal
API. Little of this infrastructure work is visible yet but it will become
more so in the coming months. For now we continue with small monthly
releases on the current system infrastructure.
These releases are limited mostly to improvements to the visualization
system (BioMixer) and small bug fixes. (012)
The notable changes since the last announced release are: (013)
- Implemented the display of the OBO part-of relationship in
the term neighborhood visualization. (014)
- Improved some default layouts in the visualization system. (015)
- Updated automated mappings for all ontologies. (016)
- Regenerated the annotator hierarchy database. The versions
of ontologies in this database are now much more current. (017)
- Implemented support for federated queries in the BioPortal
SPARQL endpoint. (018)
- Moved the mappings from the BioPortal endpoint into a
separate public endpoint. This change allows us to update automated
mappings more cleanly. (019)
- Added the following resources to the Resource Index. All of
these resources are the results of our collaboration with the Neuroscience
Information Framework (NIF) group. (020)
o NIF PubMed Health: Tests (021)
o NIF Drug Related Gene Database (022)
o NIF Gemma (023)
o NIF Integrated Disease View (024)
- Fixed "Maximum Depth" metric for a number of ontologies.
Was incorrectly displaying "1" in some cases. (025)
- Fixed web service failure when attempting to retrieve all
concepts from several ontologies. (026)
- Fixed annotator to return all ancestor terms. Was missing
some ancestors for some ontologies. (027)
- Fixed Search to work correctly in MeSH. (028)
- Fixed problem with SPARQL query to BioPortal endpoint on
queries that include ORDER and LIMIT clauses. (029)
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