Thanks you, Ray ... Congratulations! Kudos to you and the entire
BioPortal team. (01)
Would you kindly provide us a link to the revised BioPortal API. (02)
Can you also tell us, what is the BioPortal version in the
ncbo-appliance now, and when is the next ncbo-appliance version likely
to be released (and what BioPortal version is expected in that.) (03)
Fyi, folks (from the OOR team) ... please note the announcement (below.) (04)
Best. =ppy
-- (05)
---------- Forwarded message ----------
From: Ray Fergerson <ray.fergerson@xxxxxxxxxxxx>
Date: Wed, Feb 6, 2013 at 10:46 AM
Subject: [bioportal-announce] Announcing BioPortal Release 3.12
To: announce@xxxxxxxxxxxxxxx (06)
We are happy to announce the release of BioPortal 3.12. (07)
Our development team remains primarily focused on replacing the
BioPortal backend infrastructure with an RDF triple store and revising
the BioPortal API. Little of this infrastructure work is visible yet
but it will become more so in the coming months. For now we continue
with small monthly releases on the current system infrastructure.
These releases are limited mostly to improvements to the visualization
system (BioMixer) and small bug fixes. (08)
The notable changes since the last announced release are: (09)
- Implemented the display of the OBO part-of relationship in
the term neighborhood visualization. (010)
- Improved some default layouts in the visualization system. (011)
- Updated automated mappings for all ontologies. (012)
- Regenerated the annotator hierarchy database. The versions
of ontologies in this database are now much more current. (013)
- Implemented support for federated queries in the BioPortal
SPARQL endpoint. (014)
- Moved the mappings from the BioPortal endpoint into a
separate public endpoint. This change allows us to update automated
mappings more cleanly. (015)
- Added the following resources to the Resource Index. All of
these resources are the results of our collaboration with the
Neuroscience Information Framework (NIF) group. (016)
o NIF PubMed Health: Tests (017)
o NIF Drug Related Gene Database (018)
o NIF Gemma (019)
o NIF Integrated Disease View (020)
- Fixed “Maximum Depth” metric for a number of ontologies.
Was incorrectly displaying “1” in some cases. (021)
- Fixed web service failure when attempting to retrieve all
concepts from several ontologies. (022)
- Fixed annotator to return all ancestor terms. Was missing
some ancestors for some ontologies. (023)
- Fixed Search to work correctly in MeSH. (024)
- Fixed problem with SPARQL query to BioPortal endpoint on
queries that include ORDER and LIMIT clauses. (025)
_______________________________________________
bioportal-announce mailing list
bioportal-announce@xxxxxxxxxxxxxxxxxx
https://mailman.stanford.edu/mailman/listinfo/bioportal-announce (026)
_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-forum/
Subscribe: mailto:oor-forum-join@xxxxxxxxxxxxxxxx
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-forum/
Shared Files: http://ontolog.cim3.net/file/work/OOR/
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository (027)
|