Let's come full cycle. (01)
-----Original Message-----
From: Pan, Dr Jeff Z. [mailto:jeff.z.pan@xxxxxxxxxx]
Sent: Wednesday, June 09, 2010 4:48 PM
To: Elisa Kendall; edbark@xxxxxxxx
Cc: OMG Ontology PSIG
Subject: RE: [Fwd: BioPortal 2.5 Released] (02)
Hi Ed, Elisa and all, (03)
As Elisa mentioned, our TrOWL Tractable OWL2 infrastructure supports OWL API
and is available for download from (04)
http://trowl.eu/ (05)
The web site also includes publications related to TrOWL and some How-Tos.
TrOWL has been used in some projects like MOST (Marrying Ontology and Software
Technology). (06)
Best wishes, (07)
Jeff (08)
________________________________________
From: Elisa Kendall [ekendall@xxxxxxxxxxxx]
Sent: 09 June 2010 21:37
To: edbark@xxxxxxxx
Cc: OMG Ontology PSIG
Subject: Re: [Fwd: BioPortal 2.5 Released] (09)
Hi Ed and all, (010)
Yes, which builds on the OWL API from the university of manchester. Tim
Redmond at Stanford is a colleague and friend, and although not a
current OMG member, may become one to assist in the development of a
submission. Colleagues at the university of aberdeen, who have their
own framework and set of APIs, which also build on the OWL API, are
already committed to assisting and recently joined OMG at my prompting
to that end. (011)
Elisa (012)
Ed Barkmeyer wrote:
> FYI. A community product that has its own API4KB and overlaps CTS2
> (but no PIM).
>
> -------- Original Message --------
> Subject: [ontolog-forum] BioPortal 2.5 Released
> Date: Wed, 9 Jun 2010 15:44:20 -0400
> From: Trish Whetzel <plwhetzel@xxxxxxxxx>
> Reply-To: [ontolog-forum] <ontolog-forum@xxxxxxxxxxxxxxxx>
> To: [ontolog-forum] <ontolog-forum@xxxxxxxxxxxxxxxx>
> References:
> <AANLkTinBvUd1cCVS4i_1lbfLiAzdE84XzWLBI0Q05lcc@xxxxxxxxxxxxxx>
>
>
>
> The National Center for Biomedical Ontology is pleased to announce the
> release of *BioPortal 2.5*, a Web-based platform for browsing,
> visualizing, mapping, and commenting on biomedical ontologies and
> terminologies. Our new release of BioPortal includes many new
> features, Web services, and bug fixes. BioPortal
> (http://bioportal.bioontology.org) is a comprehensive repository of
> biomedical ontologies that enables users to access and share
> ontologies that are actively used in biomedical communities. Users can
> publish their ontologies in BioPortal, link ontologies to each other,
> review ontologies and comment on specific terms, list projects that
> use ontologies, annotate textual metadata with ontologies, and use Web
> services to incorporate ontologies or their components into their
> software applications.
>
> Major new features in this release include the following:
>
> - Support for *structured notes and term requests*: Users can
> now use BioPortal to request that content developers add new terms.
> BioPortal provides a structured template for making such requests,
> allowing users to suggest preferred names, synonyms, and definitions
> for the requested terms. BioPortal stores the requests as structured
> notes that are attached to the ontology and that other ontology tools,
> such as Protégé, will be able to use.
>
> - Support for *email notifications* to interested parties
> whenever a BioPortal user creates new notes for an ontology of
> interest. (If you would like to subscribe to notifications about a
> particular ontology, please send email to support@xxxxxxxxxxxxxxx
> <mailto:support@xxxxxxxxxxxxxxx>. We will have an interactive form to
> sign-up for notifications shortly.)
>
> - A set of prototype Web services to generate *RDF
> representation for terms* in ontologies in BioPortal (see
> documentation [1] for details).
>
> - A prototype end-point for SPARQL access to all ontologies in
> BioPortal: http://sparql.bioontology.org
>
> - A set of Web services for retrieving instance information for
> OWL ontologies [1]. We are planning to release a user interface for
> viewing instances shortly.
>
> - New ontology widgets that developers can embed on their Web
> sites, including an *ontology tree widget* that allows Web-site
> authors to present a display of an ontology or an ontology subtree for
> any BioPortal ontology in any Web page.
>
> - A preview release of *Bio-Mixer*, a mashup tool that provides
> extremely flexible browsing and exploration of ontologies and their
> mappings
>
> [1] http://www.bioontology.org/wiki/index.php/NCBO_REST_services
>
>
>
> Trish Whetzel, PhD
> Outreach Coordinator
> The National Center for Biomedical Ontology
> Ph: 650-721-2378
> whetzel@xxxxxxxxxxxx <mailto:whetzel@xxxxxxxxxxxx>
> http://www.bioontology.org
>
> (013)
The University of Aberdeen is a charity registered in Scotland, No SC013683. (014)
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