Thank you very much for the prompt response, Jim. (01)
Paul, could you please tell us what exactly need to be done to (02)
(a) modify the schedule, and (03)
(b) completely disable OBO pull, (04)
... and on Paul's instructions, would Tejas please help do (a) above,
and do it once a week (at least for now, say at 4am PST every
Saturday) and then rebuild and redeploy into tomcat, .... assume that
will leave the existing ontologies (including those already pulled
from the OBO Foundry) intact. (05)
Thanks & regards. =ppy
-- (06)
On Sun, Feb 21, 2010 at 7:52 PM, <jchatign@xxxxxxx> wrote:
> Peter,
>
> I checked the logs on my local (BBN) machine and can confirm that the
> federation is only running every four hours. Each run is completing in just
> a few seconds because it isn't finding any *new* ontologies on the
> OOR-sandbox. And you are right that federation is a pure "download"
> operation as far as OOR-sandbox is concerned.
>
> I believe the "OBO pull" operation does a complete checkout (cvs or svn) of
> the OBO repository each time it runs. So that could account for the traffic
> you're seeing if it has been configured to run hourly.
>
> To change an operation's schedule (or disable it completely) you need to
> modify the bioportal core's build.properties file, rebuild and redeploy into
> tomcat.
>
> In any case, having a look at bioportal.log (or catalina.out) on the
> OOR-sandbox machine would likely tell the full story.
>
> Jim (07)
>> -----Original Message-----
>> From: Peter Yim [mailto:peter.yim@xxxxxxxx]
>> Sent: Sunday, February 21, 2010 4:21 PM
>> To: Paul R Alexander; Jim Chatigny; Tejas Parikh; Shinya Yamada
>> Cc: OpenOntologyRepository-development; [cwe-imp]
>> Subject: Heavy "upload" traffic to the OOR-sandbox
>>
>>
>> Paul / Jim / Tejas / Shinya,
>>
>>
>> I am seeing some irregular traffic pattern in the OOR-sandbox.
>>
>> See:
>> http://ontolog.cim3.net/file/work/OOR/oor-dev/issue/oor-01_eth
>> 0-traffic_2010-02-21_172029.jpg
>> ... where I have shown the traffic into eth-0 of the <oor-01> vm.
>>
>> [ ... Started about mid-day Fri 2010.02.12, we are seeing
>> uploads that goes into the OOR-sandbox every hour (starting
>> about 15 min. past the hour, and lasting anywhere from 10 to
>> 30 minutes or so) and peeks at rates of up to ~10mbps. ]
>>
>> Ref. Jim's explanations last Friday
>> (http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_20
>> 10_02_19#nid28PL),
>> I suspect this traffic could be the result of:
>>
>> (a) the BioPortal "OBO-pull" traffic - something BioPortal
>> would do to periodically check the Open Biomedical Ontologies
>> (OBO) Foundry, and pull over any updates into the BioPortal.
>> Assuming the OOR-sandbox has not been customized in this
>> respect (to "not" behave like BioPortal) then this probably
>> could be it ... although, I am somewhat surprised that there
>> is *so much traffic* needed to sync up with the OBO Foundry ... or,
>>
>> (b) Jim's federation traffic ... although this is less
>> likely, because Jim claims that he has been "downloading"
>> from the OOR-sandbox to his instance of the repository, and
>> this traffic, presumably, is traffic going "into" the
>> OOR-sandbox and not "out of" it.
>>
>>
>> Questions:
>>
>> 1. Does the above explain the situation adequately, or am I
>> missing something (somewhere else)?
>>
>> 2. if above (a) is really the case, can it be stopped by the
>> OOR-sandbox admin (or does it have to be modified at the
>> configuration, or the code somewhere). [I can only see an
>> option to invoke the "OBO Pull - Run" (and don't seem to see
>> a "OBO Pull - Stop") at the Admin GUI.
>>
>> 3. Corrective action suggestions and plans ... anyone?
>>
>>
>> Thanks & regards. =ppy
>> --
>>
>
>
> (08)
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