Joint NCBO-OOR Panel Discussion: "Kicking-off the Next Phase of Collaboration" - Tue 13-Sep-2011 (2WWD)
This is an important milestone for the OpenOntologyRepository initiative, and will mark a new phase of collaboration between the NCBO-BioPortal team and the OOR team. Join us to find out more on where things stand, what changes are in store, some of the vision going forward, and provide us your input. (2WWE)
Note that we have a hard stop at 10:00am PDT for this session. To make sure we can get the best out of the 90 minutes available for this session, we will start and end promptly on time. Please dial into the conference line a few minutes before the scheduled start time. (2WWF)
- Panelists: (2WYV)
- Professor MarkMusen (NCBO; Stanford) (2WWH)
- Dr. NatashaNoy (NCBO; Stanford) (2WWI)
- Dr. TrishWhetzel (NCBO; Stanford) (2WWJ)
- Dr. LeoObrst (OOR; MITRE) (2WWK)
- Professor KenBaclawski (OOR; Northeastern U) (2WWL)
- Dr. ToddSchneider (OOR; Raytheon) (2WWM)
- Archive: (2WWN)
- Agenda & Proceedings (2WWO)
- Abstract (2WWP)
- Prepared presentation material can be accessed by clicking on each of the title links below: (2WWQ)
- [ 0-Opening:Musen (no slides) ] . [ 1-BioPortal:Fergerson ] . [ 2-OOR:Yim-Obrst-Schneider-Baclawski) ] (2WWR)
- audio recording of the session [ 1:23:44 ; mp3 ; 9.6MB ] (2WWS)
- Transcript of the online chat session during the panel discussion (2WWT)
- Other Resources (2WWU)
Agenda & Proceedings: (2WXS)
Session Topic: "Kicking-off the Next Phase of NCBO-OOR Collaboration" (2WXT)
- Session Format & Agenda: this is a virtual session conducted over an augmented conference call: (2WXU)
- 1. Opening Remarks - MarkMusen (5 min.) (2WXV)
- 2. NCBO Briefing - RayFergerson (20 min.) ... [ slides ] (2WXW)
- 3. OOR Briefings - LeoObrst-PeterYim, KenBaclawski-ToddSchneider (2 presentations, 10 min. each) (2WXX)
- 3. Q & A and open discussion - All (30 min.) ... please refer to process above (2WXY)
- 4. Conclusion / Follow-up - co-chairs (2WXZ)
Abstracts: (2WY0)
- Topic: "Kicking-off the Next Phase of NCBO-OOR Collaboration" (2WY1)
- by PeterYim & RayFergerson (2WY2)
This is an important milestone for the OpenOntologyRepository initiative, and will mark a new phase of collaboration between the NCBO-BioPortal team and the OOR team. (2WY3)
Professor MarkMusen, Principal Investigator of NCBO, and a staunch supporter of the OOR initiative will kick-off this session for us. His opening will be followed by briefings from both the NCBO-BioPortal team and the OOR team. The briefings will include reports on the current status, important changes and plans that are underway, and how the teams see things both at a high-level (vision, strategy, ...) and low-level (tactics, implementations, coding, operations, ...) going forward. (2WY4)
The breifings will be followed by an extended discussion among the panelists and all participants at this session, where we hope to be able to collect input from the community on their expectations, as well as insights on how we can get the best synergy from this next phase of the NCBO-OOR collaboration. (2WY5)
Come join us at this session to find out more on where things stand, what changes are in store, some of the vision going forward, and provide us your input. (2WY6)
Transcript of the online chat during the session: (2WY7)
see raw transcript here. (2WY8)
(for better clarity, the version below is a re-organized and lightly edited chat-transcript.) Participants are welcome to make light edits to their own contributions as they see fit. (2WY9)
-- begin of chat session -- (2WYA)
[08:19] PeterYim: Welcome to the (2WZS)
= Joint NCBO-OOR Panel Discussion - Tue 13-Sep-2011 = (2WZT)
Topic: : "Kicking-off the Next Phase of NCBO-OOR Collaboration" (2WZU)
Co-chairs: Dr. RayFergerson (NCBO; Stanford) and Mr. PeterYim (OOR; Ontolog; CIM3) (2WZV)
Panelists: Professor MarkMusen (NCBO; Stanford) Dr. NatashaNoy (NCBO; Stanford) Dr. TrishWhetzel (NCBO; Stanford) Dr. LeoObrst (OOR; MITRE) Professor KenBaclawski (OOR; Northeastern U) Dr. ToddSchneider (OOR; Raytheon) (2WZW)
Please refer to details on session page at: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_09_13 (2WZX)
Participants will be muted before session starts To unmute phone: press *3 ... to put phone on mute again: *2 (2WZY)
. = Proceedings: = . (2WZZ)
[08:22] MikeDean: I'll need to drop off around 12:10, but will lurk until then (2X00)
[08:24] PeterYim: Hi Mike ... thanks for being here (2X01)
[08:26] ToddSchneider: Peter, I may need to leave after the first hour. I'll try and stay as long as possible. (2X02)
[08:27] anonymous morphed into TimWilson (2X03)
[08:28] TimWilson: Will there be sound on "hopper"? Does the VNC have sound? (2X04)
[08:59] PeterYim: @Tim - the HOPPER server (i.e. vnc2) is only for screen sharing ... no voice support (2X05)
[08:28] anonymous morphed into Niranjan Manjunath (2X06)
[08:30] anonymous morphed into RayFergerson (2X07)
[08:30] Kathy Ellis2 morphed into KathyEllis (2X08)
[08:32] anonymous morphed into ElizabethFlorescu (2X09)
[08:36] ToddSchneider: Peter, I'm having phone issues. (2X0A)
[08:37] KenBaclawski: Todd, let me know if you need me to take over for you in our talk. (2X0B)
[08:38] ToddSchneider: Ken, I now have a voice connection. (2X0C)
[08:36] anonymous morphed into ChuckRehberg (2X0D)
[08:38] anonymous morphed into Dave Hau (NCI) [DavidHau] (2X0E)
[08:40] ToddSchneider: Ray, can you speak louder? (2X0F)
[08:40] anonymous morphed into FrankOlken (2X0G)
[08:44] anonymous morphed into MyCoyne (2X0H)
[08:53] FrankOlken: I still did not catch which RDF triple store is being used. (2X0I)
[08:53] PeterYim: @Frank - let's ask Ray during the discussion later (2X0J)
[08:54] anonymous morphed into YefimZhuk (2X0K)
[08:40] pradeep: not able to dial from south korea (2X0N)
[08:40] pradeep: any help? sorry (2X0O)
[08:52] PeterYim: @pradeep - besides the US conference nbr, can you try some of the other (EU) phone numbers? (2X0P)
[09:04] pradeep: @PeterYim tried all the numbers not able to connect. Will wait for the audio files. Any possibility of using skype ? I am highly interested in the talk please help me. (2X0Q)
[09:05] PeterYim: @pradeep - too bad ... the audio archive will be ready in a couple of days (2X0R)
[09:02] YefimZhuk: Ray, thanks for a very informative talk! which RDF Triplestore do you use in the BioPortal? (2X0L)
[09:06] ChuckRehberg: I need to leave - he can have my phone line (2X0M)
[09:06] PeterYim: @Chuck - thanks ... it's not the limitation of lines that is the problem, unfortunately (2X0S)
[09:10] pradeep: @PeterYim thank you. (2X0T)
[09:13] JohnBateman: @Todd: multiple representation languages: +10 :-) (2X0U)
[09:13] PeterYim: @JohnBateman - that's where you guys come in! (2X0V)
[09:14] ToddSchneider: John, support for multiple representation languages requires the independence of the functionality. (2X0W)
[09:21] LeoObrst: Ray, Mark, can you elaborate a bit on what you envision for licensing ontologies? (2X0X)
[09:40] FrankOlken: What backend are you planning to use? The audio is distorted? What triple store? (2X0Y)
[09:42] FrankOlken: [RayFergerson mentioned 4store as a strong candidate] Looking at 4store triple store. Will it support SPQRQL 1.1? (2X0Z)
[09:58] FrankOlken: http://4store.org/ is the web site for 4store triple store. (2X10)
[09:44] ToddSchneider: Have to go. Cheers. (2X11)
[09:59] LeoObrst: Thanks, all! Goodbye. (2X12)
[09:59] PeterYim: great sessions ... thanks, everyone! (2X13)
[09:59] PeterYim: -- session ended: 10:00 am PDT -- (2X14)
-- end of chat session -- (2WYB)
- Further Question & Remarks - please post them to the [ oor-forum ] listserv (2WYC)
- if you are already subscribed, post to <oor-forum [at] ontolog.cim3.net> (2WYD)
- (if you are not yet subscribed) you may subscribe yourself to the [ oor-forum ] listserv listserv, by sending a blank email to <oor-forum-join [at] ontolog.cim3.net> from your subscribing email address, and then follow the instructions you receive back from the mailing list system. (2WYE)
Resources (2WX8)
- NCBO - National Center for Biomedical Ontology - http://www.bioontology.org/ (2WX9)
- The BioPortal - http://bioportal.bioontology.org/ (2WXA)
- OpenOntologyRepository - Homepage for the OOR initiative (2WXB)
- A recent presentation on OOR - OOR Presentation at SemTech2010 (2WXC)
- The OOR_SandBox (powered by the NCBO BioPortal) instance, now online at: http://sandbox.oor.net (2WXD)
- OOR Project site and code repository at SemWebCentral - http://oor.semwebcentral.org (2WXE)
- OpenOntologyRepository_IPR Policy (2WXF)
- 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: Dr. ToddSchneider & Professor MichaelGruninger - Panelists: Dr. ToddSchneider (Raytheon), Mr. MikeDean (Raytheon-BBN), Dr. NatashaNoy (NCBO, Stanford University), Dr. ImmanuelNormann (Bremen University, BORG), Professor KenBaclawski (Northeastern University), Professor MichaelGruninger (University of Toronto) - OOR/ConferenceCall_2010_09_17 (2WXG)
- 2009_10_15 - Thursday: "OOR-BioPortal Comparative Analysis" panel discussion - Chair: ToddSchneider - Panelists: NatashaNoy, MichaelDorf, KenBaclawski, ElisaKendall & MikeDean - ConferenceCall_2009_10_15 (2WZ0)
- 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: NatashaNoy - Panelists: CarlosRueda, PaulAlexander, JohnGraybeal, MikeDean, StephenGranite, AlexGarcia, KenBaclawski - ConferenceCall_2009_07_30 (2WXH)
- 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: ToddSchneider; Panelists: MarkMusen, NatashaNoy, MikeDean, PaulBuitelaar / AndreasHarth, MathieuDaquin, KenBaclawski, MichaelGruninger - ConferenceCall_2009_02_19 (2WXI)
- 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen, LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22 (2WXJ)
- 2008_04_29 - Our team made a presentation with our history, status, OOR rationale and requirements, and a proposed roadmap at the OntologySummit2008 - see: http://ontolog.cim3.net/cgi-bin/wiki.pl?OntologySummit2008/FaceToFaceAgenda#nid1BLS (2WXK)
- 2007_12_06 - Thursday: Invited Speaker - Professor MarkMusen: "If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies" - ConferenceCall_2007_12_06 (2WXL)
- OntologySummit2008 - "Toward An Open Ontology Repository" (2WXM)
- our most recent regular OOR-team meeting - OOR/ConferenceCall_2011_09_06 (2WXO)
- [ oor-forum ] message archive - http://ontolog.cim3.net/forum/oor-forum/ (2WXP)
- (if you are not yet subscribed) you may subscribe yourself to the [ oor-forum ] listserv, by sending a blank email to <oor-forum-join [at] ontolog.cim3.net> from your subscribing email address, and then follow the instructions you receive back from the mailing list system. (2WXQ)
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Audio Recording of this Session (2WYF)
- To download the audio recording of the session, click here (2WYG)
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- Conference Date and Time: 13-Sep-2011 8:30am ~ 10:00pm Pacific Daylight Time (2WYI)
- Duration of Recording: 1 Hour 24 Minutes (2WYJ)
- Recording File Size: 9.6 MB (in mp3 format) (2WYK)
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- Take a look, also, at the rich body of knowledge that this community has built together, over the years, by going through the archives of noteworthy past Ontolog events. (References on how to subscribe to our podcast can also be found there.) (2WYM)
For the record ... (2WYN)
How To Join (while the session is in progress) (2WYO)
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Conference Call Details: (2WC6)
- Date: Tuesday, 13-Sep-2011 (2WC7)
- Start Time: 8:30am PDT / 11:30am EDT / 5:30pm CEST / 4:30pm BST / 15:30 UTC (2WC8)
- ref: World Clock (2WC9)
- Expected Call Duration: 1.5 hours (2WCA)
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- Discussions and Q & A: (2WWZ)
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Attendees (2WJ1)
- Attended (and a few registered participants who may have joined after the roll call): (2WPX)
- RayFergerson (co-chair) (2WPZ)
- PeterYim (co-chair) (2WQ0)
- MarkMusen (2WQ1)
- NatashaNoy (2WQ2)
- TrishWhetzel (2WQ4)
- MikeDean (2WQ3)
- LeoObrst (2WQ5)
- KathleenEllis (2WZA)
- KenBaclawski (2WVI)
- ToddSchneider (2WW0)
- YuriyMilov (2WZ2)
- TimWilson (2WYY)
- Niranjan Manjunath (NEU) (2WZG)
- TimDarr (2WZ4)
- YefimZhuk (2WZH)
- Gilberto Fragoso (NIH/NCI) (2WZ5)
- ChuckRehberg (2WZI)
- ElizabethFlorescu (2WZ6)
- JohnBateman (2WZE)
- NancyWiegand (2WZJ)
- DavidHau (2WZP)
- FrankOlken (2WZQ)
- MyCoyne (2WZR)
- TerryLongstreth (2WZ9)
- DeborahMacPherson (2WQ6)
- PaulCourtney (2WYW)
- (2WYX)
- ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. (2WQ7)
- Regrets: (2WQ8)