OntologWiki: OOR/ConferenceCall 2011 02 04

OpenOntologyRepository: OOR Team Conference Call - Fri 2011_02_04 (2M9G)

Conference Call Details: (2MAK)

Date: Friday, 4-Feb-2011 (2MAL)
Start Time: 9:00pm EST / 6:00am PST / 3:00pm CET / 2:00pm GMT / 14:00 UTC (2M9H)
- ref: World Clock (2M9I)
Expected Call Duration: 1.0~1.5 hours (2M9J)
Dial-in Number: (2M9K)
- from a US telephone (US): +1-218-844-8060 (domestic long distance cost will apply) (2M9L)
- When calling in from a phone, use Conference ID: "4389979#" (2M9M)
- from Europe, call: (2M9N)
  - Austria 0820-4000-1577 (2M9O)
  - Belgium 070-35-9992 (2M9P)
  - France 0826-100-280 (2M9Q)
  - Germany 01805-00-7642 (2M9R)
  - Ireland 0818-270-037 (2M9S)
  - Italy 848-390-179 (2M9T)
  - Spain 0902-886-056 (2M9U)
  - Switzerland 0848-560-327 (2M9V)
  - UK 0844-581-9148 (2M9W)
- callers from other countries please dial into either one of the US or European numbers (2M9X)

In-session chat-room url: http://webconf.soaphub.org/conf/room/oor/ (2M9Y)

RSVP to peter.yim@cim3.com appreciated, ... or simply just by adding yourself to the "Expected Attendee" list below (if you are a member of the team.) (2M9Z)

This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2011_02_04 (2MA0)

Please note that this session may be recorded, and if so, the audio archive is expected to be made available as open content, along with the proceedings of the call to our community membership and the public at-large under our prevailing open IPR policy. (2MA1)

Attendees (2MA2)

Attended: (2MA3)
- LeoObrst (chair) (2MA5)
- JouniTuominen (2MDP)
- PeterYim (2MA7)
- TimDarr (2MAM)
- MichaelGruninger (2MOH)
- ToddSchneider (only for 15~20 min.) (2MOG)
- MathieuDaquin (2MAG)
- YuriyMilov (2MOI)

Expecting: (2MA4)
- MikeDean (will be a bit late) (2MA6)
(2MA8)
- ... if you are coming to the meeting, please add your name above (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ... (2MA9)

Regrets: (2MAA)
- KenBaclawski (2MAN)

Agenda Ideas: (2MAB)

please insert any additional items below (along with your name for follow-up purposes) (2MAC)

OOR code-repository and re-assessing the 'fork' (what does that mean?) [MikeDean, KenBaclawski, et al.] (2MAH)
planning for an upcoming panel session on OOR metadata [MichaelGruninger] (2MAI)
ideas and suggestions (some involving work previously done by the NeOn project) [MathieuDaquin] (2MI7)
continue discussion on: Architecture, API and (default) Development Platform [All] (2MAJ)
... (2MAD)

Agenda & Proceedings (2MAE)

1. Meeting called to order: (2MIA)

LeoObrst takes the chair and welcome everyone (2MIB)
review and adopt agenda (2MIC)
PeterYim volunteered to take notes (2MID)

2. Roll Call: (2MIE)

see above (2MIF)

welcome and intro of new member(s) (as needed) (2MIG)

3. Status Review and Discussion: (2MIH)

Urgent issues: (2MII)
- OOR-sandbox down ... probably need to update to latest version of BioPortal. (2MIJ)

Review and update our "Most Critical Task(s) At Hand" list (2MIK)
- ref. http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository#nid17YH (2MIL)

review previous action items (from 2011.01.21) (2MIM)
- MikeDean & KenBaclawski to get code repository (at semwebcentral) going (2MIN)
- YuriyMilov will help MikeDean test the new code repository (2MIO)
- MichaelGruninger will organize a session on OOR metadata (2MIP)

Key items for review and discussion today: (2MIQ)

OOR code-repository and re-assessing the 'fork' (what does that mean?) [MikeDean, KenBaclawski, et al.] (2MIT)
- postponing the update report to next meeting (2MOJ)
- Dean / Yuri: repository works (population of codebase pending) (2MOK)

planning for an upcoming panel session on OOR metadata [MichaelGruninger] (2MIU)
- date reserved - Fri 2011.03.18 (see action item below too) (2MOL)

ideas and suggestions (some involving work previously done by the NeOn project) [MathieuDaquin] (2MIV)
- Mathieu: see proposed architecture (what I think would be an "ideal" ontology repository) at - http://ontolog.cim3.net/file/work/OpenOntologyRepository/OOR-Architecture/OOR-Architecture-Candidates/OOR-architecture-proposal--MathieuDaquin_20110204.pdf (2MIW)
- Many of the components mentioned exist and can be directly reused. The aspects that we would be keen to work (not making commitments now, though) on are: (2MIX)
  - the versioning element, which as far as I can tell, has not been treated very well in existing ontology repositories (2MIY)
  - common vocabularies to access and describe ontology repositories (OMV exist and should be employed in my opinion, but there is still a lot to do on exposing content of repositories to other repositories, "common APIS" for aggregating content, etc.) (2MIZ)
  - the access right aspects, which are a bit tricky in a collaborative ontology-based environment (2MJ0)
  - the use of ontology repositories in ontology engineering environments (especially to facilitate reuse and through integrating with ontology editors). (2MJ1)
- Part of that has been partially considered in NeOn, but there is quite significant work to be done in order to actually deliver such features. (2MJ2)

continue discussion on: Architecture, API and (default) Development Platform [All] (2MJ3)
- YuriyMilov: should we be architecting (i) just a repository, or (ii) a semantic platform ... ? (2MOM)
  - Peter / Leo: we can bring this up at the next time we have a panel session on the topic (2MON)
- Organizing a next Panel session on this - date reserved: Fri 2011.03.04 (2MOO)
  - see action item below too (2MOP)

items below are from the previous meeting(s) and will be updated as we proceed with this meeting. (2MIS)

Focus and Plans for OOR in 2011 (2MIR)

Review: members and OOR-related activities (2MJ5)
- OOR-sandbox status (2MJ6)
- code repository status (2MJ7)
- NCBO (2MJ8)
- NEU (2MJ9)
- Raytheon-BBN (2MJA)
- Bremen (2MJB)
- UToronto (2MJC)
  - will have a set of use cases by the end of the term (mid-April); references Ken's work on use cases too. (2MJD)
- Ryerson (2MJE)
- Mathet (2MJF)
- SOCoP_INTEROP (2MJG)
- DataONE (2MJH)
- NeOn (KMi and STL) (2MJI)
- ONKI (2MJJ)
- MMI (2MJK)
- Use Cases (2MJL)
- Architecture (2MJM)
- API (2MJN)
- Gatekeeping (2MJO)
- production OOR instance (2MJP)
- SIO (2MJQ)
- Funding (2MJR)

what can this team contribute to the upcoming OntologySummit2011 ? (2MK5)
- Theme: "Making the Case for Ontology" (2MK6)
- ToddSchneider will help drive (2MK7)

(2010.12.17) PeterYim: I just (finally!) made contact with the "Content Repository" folks - ref. http://expertvoices.nsdl.org/duraspace/2010/12/14/open-repositories-2011-collaboration-and-community-the-social-mechanics-of-repository-systems/ (2MK8)
- note submission deadline is 2011.02.28 ... anyone planning to submit? (2MK9)

OOR system architecture (2MKA)
- action items - will discuss in depth along with API & CL-support discussion which we will try to set up asap (2MKB)
  - Ken and Todd will try to get together offline and talk about this within the next couple of weeks (2MKC)
  - candidate architecture team: MikeDean, KenBaclawski, ToddSchneider, ImmanuelNormann, TillMossakowski, CameronRoss, MichaelGruninger, AdamPease, NatashaNoy, ... (2MKD)
  - (also desirable to be at the meeting:) AlexGarcia, MathieuDaquin, MikeUschold, JohnBateman, JohnSowa, PatHayes, PatCassidy, MarkMusen, LeoObrst, PeterYim, ... (2MKE)
  - tentatively ... devoting the Oct-15 meeting for this - architecture, API, metadata (OMV extension), ... no presentations; only serious discussions! (2MKF)

OOR APIs (2MKG)
- ref. the "OOR common resources" discussion thread - starting from: Cameron's post (2MKH)
- action items - (2MKI)

Ontology metadata requirement (2MKJ)
- action items - (2MKK)

Code Repository (2MKL)
- ETA of the oor.semwebcentral.org going into operation with baseline code? - [Mike: by 2010.10.15] (2MKM)
- do we consider github (as suggested by NatashaNoy on 2010.09.17)? (2MKN)
- action items - (2MKO)

4. Member activities updates: (2MKP)

5. Funding progress: (2MKQ)

6. Any Other Business: (2MKR)

7. Action items: (2MKT)

MikeDean to work with BioPortal folks to re-establish an updated "fork" point (2MOQ)
- possibly over the [oor-dev] list (2MOR)

Architecture, API, Platform panel session: Fri 2011.03.04 (2MOS)
- Peter to contact Todd and Ken about co-chairing this meeting (2MOT)
- ALL architecture contributors to populate their sub-page with next level of details, to facilitate the merging of work that is already available. (2MOU)

Ref metadata session - Fri 2011.03.18 (2MOV)
- MichaelGruninger will chair (2MOW)
- MichaelGruninger to contact PeterHaase and NatashaNoy (2MOX)
- MathieuDaquin will help contact Raul Palma (now in Poland, who worked with PeterHaase on the NeOn OMV before) (2MOY)

8. Schedule Next Meeting & Adjourn: (2MKU)

Next Meeting: (2MKV)
- our next regular team call, Fri 2011.02.18 - 6:00am PST / 9:00am EST (ref. worldclock) (2MKW)
- developing session page will be at [[ OOR/ConferenceCall_2011_02_18 ]] (2MKX)
- Note: earlier resolution: all team members please (if possible) block out Fridays 1.5 Hr (2MKY)
- ref. our doodle poll (see: http://doodle.com/a2snxkpkd8hhxek4 ), looks like we can settle in on two new meeting times - a 6:00am PT (14:00 UTC) and an 8:30am PT (16:30 UTC) (or something in between) ... (2MKZ)

Call adjourned at: 7:01 am PST (2ML0)

 --
 notes taken by: PeterYim / 2011.02.04-7:13am PST
 All participants, please review and edit to enhance accuracy and granularity of the documented proceedings.    (2ML1)

Resources (2ML2)

homepage - OpenOntologyRepository - http://OpenOntologyRepository.org (2ML3)
proceedings of our previous meetings (2ML4)
OOR Charter - To promote the global use and sharing of ontologies by: 1. establishing a hosted registry-repository; 2. enabling and facilitating open, federated, collaborative ontology repositories; 3. establishing best practices for expressing interoperable ontology and taxonomy work in registry-repositories. (2MMU)
"Ontology Repository" Definition - "An ontology repository is a facility where ontologies and related information artifacts can be stored, retrieved and managed" (2MMV)
OpenOntologyRepository_Scope - documentation related to this OOR initiative's mission, charter, objectives, goals, terms of reference, definitions, scope, ... etc. (2MMW)
OpenOntologyRepository_Requirement - documentation related to the requirements of the "open ontology repository" we are planning to implement through this OOR initiative. (2MMX)
- OpenOntologyRepository_UseCases (2MMY)
OpenOntologyRepository_Approach - documentation related to this OOR initiative's approach, and the process we will be using. (2MMZ)
OpenOntologyRepository_Architecture - documentation related to the architecture of the "open ontology repository" we are planning to implement through this OOR initiative. (2MN0)
OpenOntologyRepository_Plan (2MN1)
OOR/ActiveMemberContribution (2MN2)
Team mailling list: (2MN3)
- OOR-Team discussion: [ oor-forum ]''' message archives - http://ontolog.cim3.net/forum/oor-forum/ (2MN4)
- OOR-Users discussion and support: [ oor-users ]''' message archives - http://ontolog.cim3.net/forum/oor-users/ (2MN5)
- Developers mailling list: [ oor-dev ] message archives - http://ontolog.cim3.net/forum/oor-dev/ (2MN6)
the OOR-IPR mini-series: (2MN7)
- 2010_09_09 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-1: an exposition on relevant IPR regimes - Keynote speaker: GeorgeStrawn - Chair: PeterYim - Panelists: JamieClark, JohnWilbanks, BrucePerens - ConferenceCall_2010_09_09 T (2MN8)
- 2010_09_16 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-2: what are the IPR issues relating to open ontology repositories (and ontologies in general)? - Chair: MarkMusen - Panelists: CameronRoss, AlanRector, JohnSowa, BrucePerens, JohnWilbanks, PeterYim - ConferenceCall_2010_09_16 T (2MN9)
- 2010_09_30 - Thursday: Joint OOR-Ontolog-NCBO-CC-IAOA-OASIS Panel Discussion - "IPR issues in Ontology and the OOR" session-3: discussion and consensus on licensing arrangements for the OOR Initiative, and positions we might take on related IPR issues - chair: LeoObrst - Panelists: PeterYim, MikeDean, BrucePerens, JamieClark - ConferenceCall_2010_09_30 T (2MNA)
the Joint OOR-OntologySummit2008 Panel Discussions: (2MNB)
- 2008_02_28 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Ontology Registry and Repository Technology & Infrastructure Landscape" - Co-chairs: LeoObrst & FrankOlken; Panelists: BruceBargmeyer, MikeDean, MarkMusen, FarrukhNajmi & PeterYim - ConferenceCall_2008_02_28 T (2MNC)
- 2008_03_27 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-1" - Chair: LeoObrst & FabianNeuhaus; Panelists: WilliamBug, EvanWallace, JohnLMcCarthy, KenBaclawski, PeterBenson & RexBrooks - ConferenceCall_2008_03_27 T (2MND)
- 2008_04_03 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "An Open Ontology Repository: Rationale, Expectations & Requirements - Session-2" - Chair: LeoObrst & FabianNeuhaus; Panelists: DougLenat, DekeSmith, MarciaZeng, DeniseBedford, PatHayes, MalaMehrotra & RobRaskin - ConferenceCall_2008_04_03 T (2MNE)
- 2008_04_10 - Thursday: Joint OOR-OntologySummit2008 Panel Discussion: "Developing an Ontology of Ontologies for OOR" - Co-chairs: BarrySmith & MichaelGruninger; Panelists: MichaelGruninger, PeterHaase, NatashaNoy & ElisaKendall - ConferenceCall_2008_04_10 T (2MNF)
the OOR Development panel sessions: (2MNG)
- 2008_08_22 - Friday: OOR Panel Discussion: "Getting OOR Development Off the Ground: Identifying Synergies & Gaps" (Take-1) - Chair: LeoObrst; Panelists: MikeDean, MarkMusen, LiDing, BruceBargmeyer & BillAndersen - ConferenceCall_2008_08_22 T (2MNH)
- 2009_02_19 - Thursday: Joint Ontolog-OOR Panel Discussion: "Getting OOR Development Off the Ground (Take-2): the work begins" - Chair: ToddSchneider; Panelists: MarkMusen, NatashaNoy, MikeDean, PaulBuitelaar / AndreasHarth, MathieuDaquin, KenBaclawski, MichaelGruninger - ConferenceCall_2009_02_19 T (2MNI)
- 2009_07_16 - Thursday: Joint Ontolog-OOR Panel Discussion: "Integrated tools for ontology development and management: A field guide to the Stanford technology" - Chair: MarkMusen - Panelists: TaniaTudorache, TimRedmond, NatashaNoy - ConferenceCall_2009_07_16 T (2MNJ)
- 2009_07_30 - Thursday: Joint Ontolog-OOR Panel Discussion: "BioPortal and related Ontology Repository Implementations and Development" (Take-3) - Chair: NatashaNoy - Panelists: CarlosRueda, PaulAlexander, JohnGraybeal, MikeDean, StephenGranite, AlexGarcia, KenBaclawski - ConferenceCall_2009_07_30 T (2MNK)
- 2010_02_19 - Friday: OOR Panel Discussion: "Coordinating our Open Ontology Repository Software Development" - Chair: MikeDean - Panelists: JimChatigny, MichaelGruninger, KenBaclawski, NatashaNoy - OOR/ConferenceCall_2010_02_19 T (2MNL)
- 2010_04_01 - Thursday: Joint OOR-Ontolog Panel Session: "OOR Use Cases - Take-3" - Chair: KenBaclawski & ToddSchneider - Panelists: ToddSchneider, MatthewHettinger, KenBaclawski and MaximoGurmendez - ConferenceCall_2010_04_01 T (2MNM)
- 2010_09_10 - Friday: Joint SIO-OOR-Ontolog Panel Discussion: "Common Logic (CL) Support for OOR" - Chair: JohnSowa - Panelists: JohnBateman-TillMossakowski, MichaelGruninger, CameronRoss, AdamPease, PatHayes - ConferenceCall_2010_09_10 T (2MNN)
- 2010_09_17 - Friday: OOR Panel Discussion - "Getting OOR Development Going - Take-IV" Workshop - Co-chairs: ToddSchneider & MichaelGruninger - Panelists: ToddSchneider, MikeDean, NatashaNoy, ImmanuelNormann, KenBaclawski, MichaelGruninger - OOR/ConferenceCall_2010_09_17 T (2MNO)
- 2010_10_15 - Friday: OOR Project Team Member Conference Call - discussion on the (post-BioPortal fork) OOR Architecture and API - OOR/ConferenceCall_2010_10_15 T (2MNP)
- 2010_11_19 - Friday: OOR Panel Discussion - "(Post-BioPortal fork) OOR Architecture and API - Take-II" - Co-chairs: KenBaclawski & MichaelGruninger - Panelists: KenBaclawski+ToddSchneider, AldoGangemi+AlessandroAdamou, JouniTuominen+KimViljanen, EricChan - OOR/ConferenceCall_2010_11_19 T (2MNQ)
OntologySummit2008 homepage (2MNR)
- OntologySummit2008_Communique (2MNS)
- OntologySummit2008/FaceToFaceAgenda (2MNT)
- The OOR Project Presentation (delivered at the OntologySummit2008 face-to-face workshop) (2MNU)
[ ontology-summit ] discussion archives - http://ontolog.cim3.net/forum/ontology-summit/2008-01/ (~5 months exchanges starting from Jan-2008) (2MNV)
Our key content pages: (2MNW)
- OpenOntologyRepository_Scope (2MNX)
- OpenOntologyRepository_Organization (2MNY)
- OpenOntologyRepository_Process (2MNZ)
- OpenOntologyRepository_Policy (2MO0)
- OpenOntologyRepository_IPR (2MO1)
- OpenOntologyRepository_Requirement (2MO2)
- OpenOntologyRepository_UseCases (2MO3)
- OpenOntologyRepository_Architecture (2MO4)
- OpenOntologyRepository_Approach (2MO5)
- OpenOntologyRepository_Roadmap (2MO6)
- OpenOntologyRepository_Plan (2MO7)
- OpenOntologyRepository_Funding (2MO8)
- OpenOntologyRepository_ResearchIssues (2MO9)
- OpenOntologyRepository_ResearchActivity (2MOA)
- OpenOntologyRepository_Development (2MOB)
OOR Project site at SemWebCentral - http://oor.semwebcentral.org (2MOC)
Public sandbox instance of OOR (OOR-sandbox) - http://sandbox.oor.net/ontologies (previously http://oor-01.cim3.net/ontologies) (2MOD)
- OOR_SandBox (2MOE)
- NCBO-OOR development documentation - http://www.bioontology.org/wiki/index.php/NCBO-OOR_Development (2MOF)

OOR/ConferenceCall 2011 02 04