Re: [oor-dev] Problem with extending the UI

[Paul R Alexander <palexander@xxxxxxxxxxxx>]

Ken,

I noticed when trying to run the script/generate command with sudo I got the same error you mentioned. And indeed, running 'sudo printenv PATH' shows that the paths listed there do not contain the ruby binary.

I'm not sure if you're running with sudo, but if you are the following is a workaround:

sudo -E script/generate

The '-E' option preserves the current environment variables when running a command via sudo.

Paul R Alexander
Web / UI Developer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 2/7/12 6:08 PM, kenb wrote:

When I run ruby --version on the command line it gives the version:

ruby 1.8.7 (2011-02-18 patchlevel 334) [x86_64-linux], MBARI 0x6770, Ruby 
Enterprise Edition 2011.03

so ruby certainly exists.

-- Ken

On Tue, 7 Feb 2012, Paul R Alexander wrote:

Ken,

You are correct on the folder location, we've updated that on recent
versions of the NCBO Virtual Appliance and thanks for letting me know so
I could update the docs. However, ruby should be available and executing
the script/generate command should work fine.

If you run 'ruby --version' at the command line, it should return the
ruby version you're using as the default in your path, not a 'No such
file or directory' error. Looking at your error message it almost looks
like the ruby binary has been deleted or moved out of the path.

Paul R Alexander
Web / UI Developer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research


On 1/31/12 9:47 AM, kenb wrote:

I am trying to extend the BioPortal Rails UI on oor-03 using

http://palexander.posterous.com/extending-bioportals-rails-ui

It seems one must use

cd /srv/ncbo/rails/BioPortal/current

rather than

cd /var/rails/BioPortal/current

There is a script/generate, but when I try running it, I get

/usr/bin/env: ruby: No such file or directory

Does anyone have some idea of how this can be fixed?

-- Ken

_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

 
_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/   
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/   
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/ 
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository 

_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/   
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/   
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/ 
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository     (01)