I believe there was something wrong with the checked out source code and thus with the bioportal_admin.war that was being created. I checked out admin module again (same SVN tag) and redeployed it and it worked.
--Tejas
On Sun, Feb 6, 2011 at 5:52 PM, Obrst, Leo J. <lobrst@xxxxxxxxx> wrote:
What was the problem?
Thanks, Leo
_____________________________________________ Dr. Leo Obrst The MITRE Corporation, Information Semantics
lobrst@xxxxxxxxx Information Discovery & Understanding, Command & Control Center
Voice: 703-983-6770 7515 Colshire Drive, M/S H305 Fax: 703-983-1379 McLean, VA 22102-7508, USA
Admin service is now up and running. Peter you should be able to kick off parsing for ontologies now.
--Tejas
On Sun, Feb 6, 2011 at 4:07 PM, Peter Yim <peter.yim@xxxxxxxx> wrote:
Thanks, Tejas. Let's see if Paul has some advice for us.
The fact that we are still on v2.5 (ref.
http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR_SandBox) obviously isn't
helping. Therefore, Paul, if you feel we shouldn't worry about it
until we stand up the latest code, please dispense that as an advice.
Thanks & regards. =ppy
--
On Sun, Feb 6, 2011 at 12:59 PM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx> wrote:
> Peter,
>
> I am having problem starting the admin portal. Deployment goes fine but I am
> not able to access the application.I am looking into this.
>
> --Tejas
> On Sat, Feb 5, 2011 at 9:45 PM, Peter Yim <peter.yim@xxxxxxxx> wrote:
>>
>> Tejas (& All),
>>
>>
>> 1. Thanks, the OOR-sandbox is working now (as reported earlier).
>>
>> 2. However, I just tried an admin login (pointing my browser to:
>> http://oor-01.cim3.net:8080/bioportal_admin/welcome.jsf ) and got a
>> HTTP 404 error.
>>
>> 2a. Can you fix that too, please.
>> 2b. ... Clues, anyone?
>>
>> 3. When you can get in, can you restart the parsing the the ontologies
>> that were being parsed previously, please, also?
>> which include ... (sorted):
>> //
>> 1021 - COSMO875 (COSMO)
>> 1029 - Gene Ontology (GO)
>> 1036 - Chemical entities of biological interest (CHEBI)
>> 1038 - Human disease (DOID)
>> 1042 - Mouse gross anatomy and development (EMAP)
>> 1043 - Environment Ontology (ENVO)
>> 1048 - Drosophila gross anatomy (FBbt)
>> 1050 - Fly taxonomy (FBsp)
>> 1059 - Human developmental anatomy, timed version (EHDA)
>> 1060 - human phenotype ontology (HP)
>> 1068 - Medaka fish anatomy and development (MFO)
>> 1072 - Mosquito gross anatomy (TGMA)
>> 1073 - Mosquito insecticide resistance (MIRO)
>> 1087 - PRotein Ontology (PRO)
>> 1096 - Sequence types and features (SO)
>> 1100 - Teleost anatomy and development (TAO)
>> 1101 - Teleost taxonomy (TTO)
>> 1108 - Units of measurement (UO)
>> 1114 - Units of measurement (ZFA)
>> //
>>
>> 3a. we might want to remove those who are showing a "parsing error"
>> too ... but hold that for later (in case someone can step up and
>> suggest something else we can do to them.) ... thoughts, anyone?
>>
>>
>> Thanks & regards. =ppy
>> --
>> On Sat, Feb 5, 2011 at 11:56 AM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx>
>> wrote:
>> > I have restarted all services. It seems like tomcat keeps crashing. I
>> > need
>> > to look at the logs to find out what's causing the crash.
>> >
>> > --Tejas
>>
>>
>> > On Fri, Feb 4, 2011 at 8:37 AM, Peter Yim <peter.yim@xxxxxxxx> wrote:
>> >>
>> >> Tejas,
>> >>
>> >> I just checked, and the OOR-sandbox seems to be down again
>> >> - returning a "NoMethodError in HomeController#index"
>> >> (undefined method `io' for #<Timeout::Error: execution expired>)
>> >>
>> >> Kindly re-start ... but more importantly, can we figure out why it is
>> >> crashing so much lately? ... Paul, maybe?
>> >>
>> >> Thanks in advance. =ppy
>> >> --
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