oor-dev
[Top] [All Lists]

Re: [oor-dev] OOR-sandbox admin portal access [was - Re: browsingerrors

To: OpenOntologyRepository-development <oor-dev@xxxxxxxxxxxxxxxx>
From: Paul R Alexander <palexander@xxxxxxxxxxxx>
Date: Tue, 02 Feb 2010 17:05:23 -0800
Message-id: <4B68CBD3.1020208@xxxxxxxxxxxx>
Dan,

For a new deployment this should work fine. The real driver for version consistency is going to be the OOR branch of the UI, since it is relatively static compared to the development going on in the BioPortal UI trunk, including changes made to accommodate new versions of the Core.

The confusion here might be mitigated by including some notes in the OOR branch indicating which Core and Admin tags will work for that "release" of the OOR branch.

Paul

On 2/2/10 12:39 PM, Daniel Cerys wrote:
Paul et al,

To ensure that we're using the same recipe for our meals, please confirm which source versions we should be using to setup our OOR instances.  Based on the notes I've seen passed around, we're assuming that we should be using: 

* bioportal_core:  the latest tagged version (currently tag 1023, rev2381)
* bioportalui: latest stuff in the OOR branch(currently rev402)
* bioportal_admin: the latest tagged version (currently tag 1005, rev120)

Please confirm or deny.

Thanks,
Dan


On Jan 27, 2010, at 7:26 PM, Paul R Alexander wrote:

Mike,

This is due to some recent changes on the BioPortal Core which haven't been deployed on OOR's side. I patched the OOR branch of the UI code to handle both the new and old data and did some other minor merges so if the OOR code is updated again everything should be good.

Paul


On 1/26/10 9:38 PM, Mike Dean wrote:
Peter and Mike please confirm you can access Admin portal @
http://oor-01f.cim3.net:8080/bioportal_admin/login.jsf
    
I'm now able to login.

I see that the ontologies parsed at 11:30 and that Search now works!  However, we're now getting exceptions from the Explore links in the Browse window, e.g. [1].

Thanks to Paul, Misha, Tejas, and Jim for your help.

	Mike

[1] http://oor-01f.cim3.net/visualize/10003


  
On Tue, Jan 26, 2010 at 10:53 PM, Jim Chatigny <jchatign@xxxxxxx> wrote:
    
In case it helps, here are my notes from installing the admin webapp. There
were a couple of issues: (a) the application id has to be set properly in
build.xml; and (b) there was a missing jar file. I seem to recall one or
another may have resulted in an "invalid credentials" error message.

In any case, the procedure ultimately worked OK for me.

Jim

      
-----Original Message-----
From: Peter Yim [mailto:peter.yim@xxxxxxxx]
Sent: Tuesday, January 26, 2010 5:31 PM
To: Tejas Parikh
Cc: oor-dev
Subject: [oor-dev] OOR-sandbox admin portal access [was - Re:
browsingerrors in new sandbox]


Thanks, Tejas ...

... I still can't get in (to the admin portal) though.

Guess we need help from the NCBO/BioPortal folks here ... Paul? Misha?

Thanks in advance.  =ppy
--


On Tue, Jan 26, 2010 at 7:20 PM, Tejas Parikh
<tejas@xxxxxxxxxxxxxxx> wrote:
        
Peter,

The steps to make user account an admin account do not seem to be
right. I tried making my account an admin account and it
          
did not work.
        
I used following steps:
bioportal databse, ncbo.l.role table, what is the id for
ROLE_ADMINISTRATOR (e.g., 2824). Then, look in the
          
ncbo_user table for
        
your user (firstname and lastname col), and write down the user id
from the id column (e.g. 38312). Then go to ncbo_user_role
          
table and
        
edit the row that contains your user id in the user_id
          
column, and put
        
in the role_id column the administrator role id. E.g.
(user_id:38312,role_id:2824). Restart the backend and try
          
to log into
        
the bioportal_admin


Ken Baclawski, Mike Gruninger and Leo Obrst have not
          
created account
        
on oor-01f.cim3.net sandbox yet. Once they create their
          
accounts I can
        
make them admins.



--Tejas
          
        
On Tue, Jan 26, 2010 at 10:15 PM, Peter Yim <peter.yim@xxxxxxxx>
wrote:
          
Tejas,

Thank you very much.

Have you created accounts for me and Mike, or do we have to create
our own. If the latter, please advise how.

I actually already have an account ( username = PeterYim)
            
created on
        
oor-01, and it still works on oor-01f. However, when I use
            
that set
        
of credentials at the admin login, I am getting a "Invalid
credentials supplied" error. ... Any idea?

Also, please provide Ken Baclawski, Mike Gruninger and Leo
            
Obrst with
        
access the admin portal as well.

Thanks & regards.  =ppy
--


On Tue, Jan 26, 2010 at 7:03 PM, Tejas Parikh
            
<tejas@xxxxxxxxxxxxxxx>
        
wrote:
            
Enabled ontology parser.

# Ontology Parse Scheduler properties
# Enable/Disable scheduler service flag
ontology.parse.scheduler.enabled=true
# Scheduler cron _expression_
# Fire once every hour, at 30 past the hour: 0 30 * * * ? *
ontology.parse.scheduler.cronexpression=0 30 * * * ? *

Also installed BioPortal Admin. It can be accessed at
http://oor-01f.cim3.net:8080/bioportal_admin/login.jsf
              
and made Mike
        
Dean and Peter Yim administrators using the steps given in the
install guide.

Mike / Peter can you try to login and confirm that you
              
are able to
        
access the bioportal admin portal.

Thanks,
--Tejas
              
_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/
Config/Unsubscribe:
http://ontolog.cim3.net/mailman/listinfo/oor-dev/
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

        
      
_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/   
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/   
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/ 
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository 
    
  
_________________________________________________________________ Message Archives: http://ontolog.cim3.net/forum/oor-dev/ Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/ Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/ Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/   
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/   
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

Daniel Cerys
Raytheon BBN Technologies
10 Moulton St.
Mail Stop 6/4B          Work Phone: +1(617)873-4534
Cambridge MA 02138      FAX:        +1(617)873-2794

_________________________________________________________________ Message Archives: http://ontolog.cim3.net/forum/oor-dev/ Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/ Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/ Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository

_________________________________________________________________
Message Archives: http://ontolog.cim3.net/forum/oor-dev/   
Config/Unsubscribe: http://ontolog.cim3.net/mailman/listinfo/oor-dev/   
Shared Files: http://ontolog.cim3.net/file/work/OOR/dev/ 
Wiki: http://ontolog.cim3.net/cgi-bin/wiki.pl?OpenOntologyRepository     (01)
<Prev in Thread] Current Thread [Next in Thread>