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Re: [oor-dev] BioPortal 2.2 install error

To: OpenOntologyRepository-development <oor-dev@xxxxxxxxxxxxxxxx>
From: Tejas Parikh <tejas@xxxxxxxxxxxxxxx>
Date: Wed, 4 Nov 2009 10:13:58 -0500
Message-id: <63274c480911040713r530630e8ge28ff2b027c7f019@xxxxxxxxxxxxxx>
Shinya,    (01)

i will move tomcat. thanks for mysql install.    (02)

--Tejas    (03)



On Tue, Nov 3, 2009 at 10:39 PM, YAMADA Shinya <shinya@xxxxxxxxxxxxx> wrote:
> Tejas,
>
> BTW, I've noticed tomcat is installed in /var/tomcat-6.0.20/ but it's
> not unix stadard to
> install applications under /var/. Can you install it in /usr/local/
> instead if there are no
> particular reasons that it's installed in /var/?
>
> Thanks,
> ___
> Shinya
>
>
>
> On Wed, Nov 4, 2009 at 12:32 PM, YAMADA Shinya <shinya@xxxxxxxxxxxxx> wrote:
>> Tejas,
>>
>> I've installed MySQL 5.1. Same password for root account.
>>
>> Let me know if you see any problems with new version.
>>
>> Thansk,
>> ___
>> Shinya
>>
>>
>>
>> On Wed, Nov 4, 2009 at 11:36 AM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx> wrote:
>>> Shinya,
>>>
>>> Can you please install mysql 5.1 on oor-01f? I am having trouble
>>> deleting old version of mysql.
>>>
>>> Thanks,
>>> --Tejas
>>>
>>>
>>>
>>> On Sun, Nov 1, 2009 at 11:08 PM, Peter Yim <peter.yim@xxxxxxxx> wrote:
>>>> Shinya & Tejas ...
>>>>
>>>> Given the dependency (as this may come up in future too), may I
>>>> suggest that Tejas (rather than Shinya) installs, and maintains mysql
>>>> as well, on <oor-01f>.
>>>>
>>>> Is that ok with both of you?
>>>>
>>>> Thanks & regards.  =ppy
>>>> --
>>>>
>>>>
>>>> On Sun, Nov 1, 2009 at 7:58 PM, YAMADA Shinya <shinya@xxxxxxxxxxxxx> wrote:
>>>>> Tejas,
>>>>>
>>>>> It appears the error is caused by the version of MySQL installed on the 
>box.
>>>>> 5.0.86 is installed on oor-01f but according bioportal installation doc, 
>it
>>>>> required 5.1.(trigger is not supported in 5.0)
>>>>>
>>>>> Let me know if i can re-install MySQL now.( will blow up all DB)
>>>>>
>>>>> Thanks,
>>>>> ___
>>>>> Shinya
>>>>
>>>>
>>>>> On Mon, Nov 2, 2009 at 12:26 PM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx> 
>wrote:
>>>>>> I am trying to install BioPortal using the instructions emailed by 
>Natasha.
>>>>>>
>>>>>> I am getting MySQL error when executing following command. User
>>>>>> bioportal_prd was created in MySQL and has ALL access to BioPortal
>>>>>> databases.
>>>>>>
>>>>>> grant SUPER, TRIGGER on *.* to 'bioportal_prd'@'localhost'
>>>>>>
>>>>>> MySQL error is:
>>>>>>
>>>>>> mysql> grant SUPER, TRIGGER on *.* to 'bioportal_prd'@'localhost';
>>>>>> ERROR 1064 (42000): You have an error in your SQL syntax; check the
>>>>>> manual that corresponds to your MySQL server version for the right
>>>>>> syntax to use near 'TRIGGER on *.* to 'bioportal_prd'@'localhost'' at
>>>>>> line 1
>>>>>>
>>>>>>
>>>>>> Thanks,
>>>>>> --Tejas
>>>>
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>>
>
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>    (04)

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