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Re: [oor-dev] BioPortal 2.2 install error

To: OpenOntologyRepository-development <oor-dev@xxxxxxxxxxxxxxxx>
From: YAMADA Shinya <shinya@xxxxxxxxxxxxx>
Date: Wed, 4 Nov 2009 12:39:29 +0900
Message-id: <36a3b0760911031939hec7b9b0n9e6d209cf9a80895@xxxxxxxxxxxxxx>
Tejas,    (01)

BTW, I've noticed tomcat is installed in /var/tomcat-6.0.20/ but it's
not unix stadard to
install applications under /var/. Can you install it in /usr/local/
instead if there are no
particular reasons that it's installed in /var/?    (02)

Thanks,
___
Shinya    (03)



On Wed, Nov 4, 2009 at 12:32 PM, YAMADA Shinya <shinya@xxxxxxxxxxxxx> wrote:
> Tejas,
>
> I've installed MySQL 5.1. Same password for root account.
>
> Let me know if you see any problems with new version.
>
> Thansk,
> ___
> Shinya
>
>
>
> On Wed, Nov 4, 2009 at 11:36 AM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx> wrote:
>> Shinya,
>>
>> Can you please install mysql 5.1 on oor-01f? I am having trouble
>> deleting old version of mysql.
>>
>> Thanks,
>> --Tejas
>>
>>
>>
>> On Sun, Nov 1, 2009 at 11:08 PM, Peter Yim <peter.yim@xxxxxxxx> wrote:
>>> Shinya & Tejas ...
>>>
>>> Given the dependency (as this may come up in future too), may I
>>> suggest that Tejas (rather than Shinya) installs, and maintains mysql
>>> as well, on <oor-01f>.
>>>
>>> Is that ok with both of you?
>>>
>>> Thanks & regards.  =ppy
>>> --
>>>
>>>
>>> On Sun, Nov 1, 2009 at 7:58 PM, YAMADA Shinya <shinya@xxxxxxxxxxxxx> wrote:
>>>> Tejas,
>>>>
>>>> It appears the error is caused by the version of MySQL installed on the 
>box.
>>>> 5.0.86 is installed on oor-01f but according bioportal installation doc, it
>>>> required 5.1.(trigger is not supported in 5.0)
>>>>
>>>> Let me know if i can re-install MySQL now.( will blow up all DB)
>>>>
>>>> Thanks,
>>>> ___
>>>> Shinya
>>>
>>>
>>>> On Mon, Nov 2, 2009 at 12:26 PM, Tejas Parikh <tejas@xxxxxxxxxxxxxxx> 
>wrote:
>>>>> I am trying to install BioPortal using the instructions emailed by 
>Natasha.
>>>>>
>>>>> I am getting MySQL error when executing following command. User
>>>>> bioportal_prd was created in MySQL and has ALL access to BioPortal
>>>>> databases.
>>>>>
>>>>> grant SUPER, TRIGGER on *.* to 'bioportal_prd'@'localhost'
>>>>>
>>>>> MySQL error is:
>>>>>
>>>>> mysql> grant SUPER, TRIGGER on *.* to 'bioportal_prd'@'localhost';
>>>>> ERROR 1064 (42000): You have an error in your SQL syntax; check the
>>>>> manual that corresponds to your MySQL server version for the right
>>>>> syntax to use near 'TRIGGER on *.* to 'bioportal_prd'@'localhost'' at
>>>>> line 1
>>>>>
>>>>>
>>>>> Thanks,
>>>>> --Tejas
>>>
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>>
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>>
>    (04)

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