Thanks, Natasha & Ken.... Copying the development team here, as other
developers would sure want to know this too. (01)
Regards. =ppy
-- (02)
On Tue, Sep 22, 2009 at 10:13 AM, Natasha Noy <noy@xxxxxxxxxxxx> wrote:
> Ken, Peter,
>
> The sandbox at http://oor-01.cim3.net/ works for me.
>
> The rest service URL is
> http://oor-01.cim3.net:8080/bioportal/...
>
> For example, http://oor-01.cim3.net:8080/bioportal/ontologies
>
> Ken, if you have you students run large scripts against Bioportal, could you
> please let us know in advance? Thanks a lot!
>
> Natasha (03)
> On Sep 22, 2009, at 9:08 AM, Peter Yim wrote:
>
>> Hi Ken,
>>
>> I also (just) tried http://oor-01.cim3.net/ ... and it works!
>> (Not sure why you are not getting access!?)
>>
>> The direct link to the NCBO BioPortal is:
>> http://bioportal.bioontology.org/
>> They are hosting the latest release of the BioPortal system there (our
>> OOR-01 still only has the older v2.0 version, although the plan is to
>> bring that up-to-date asap.)
>>
>> I don't seem to see the two REST links (you suggested) working either:
>> http://rest.bioontology.org/bioportal/ ... I don't know about this
>> http://rest.oor-01.cim3.net/ ... definitely not!
>>
>> Regards. =ppy
>> -- (04)
>> On Tue, Sep 22, 2009 at 8:22 AM, <kenb@xxxxxxxxxxx> wrote:
>>>
>>> I just tried http://oor-01.cim3.net/ and got no response.
>>> Unless I hear otherwise, I will tell my students to use
>>> BioPortal. They will be looking at BioPortal anyway.
>>>
>>> BTW, does the OOR sandbox support REST?
>>> If so, what is the URL? The BioPortal website is
>>> http://www.bioontology.org/bioportal
>>> and their REST URL is
>>> http://rest.bioontology.org/bioportal/
>>> so I am presuming that the OOR sandbox REST URL is
>>> http://rest.oor-01.cim3.net/
>>>
>>> -- Ken (05)
... (06)
>>>> On Sun, Sep 20, 2009 at 6:11 PM, Peter Yim <peter.yim@xxxxxxxx>
>>>> wrote:
>>>>>
>>>>> Ken, Natasha and All,
>>>>>
>>>>>
>>>>> I am happy to let everyone know that the OOR-sandbox at
>>>>> <http://oor-01.cim3.net/> is now up and operational again now (...
>>>>> thanks to Shinya Yamada's diligence.)
>>>>>
>>>>> We have actually moved the latest vm image of <oor-01> onto a
>>>>> difference piece of hardware ... it is now hosted on the server:
>>>>> <GRAY.CIM3.COM>. Fyi, GRAY is still sitting at my home-office,
>>>>
>>>> though.
>>>>>
>>>>> We will continue to work on moving that vm image to <oor-01f> (that
>>>>> will be sitting at our colocation facility and has a 100 Mbps
>>>>
>>>> access
>>>>>
>>>>> bandwidth to the Internet backbone), which will, hopefully,
>>>>
>>>> alleviate
>>>>>
>>>>> any bandwidth limitations that we right run into, when dozens of
>>>>> people access the OOR-sandbox simultaneously (which might happen
>>>> given Ken's class.) ... I will keep everyone posted on the progress.
>>>>>
>>>>>
>>>>> Thanks & regards. =ppy
>>>>> -- (07)
>>>>> On Mon, Sep 14, 2009 at 6:40 PM, Peter Yim <peter.yim@xxxxxxxx>
>>>>
>>>> wrote:
>>>>>>
>>>>>> Ken and All,
>>>>>>
>>>>>>
>>>>>> I understand Ken is starting a class tomorrow (9/15) that will be
>>>>>> making use of the OOR.
>>>>>>
>>>>>> While checking to make sure everything is in order, I discovered
>>>>
>>>> that
>>>>>>
>>>>>> the OOR-01 vm is down. We, at CIM3, is looking into this
>>>>
>>>> (enlisting
>>>>>>
>>>>>> Natasha and Misha's help as needed) and is trying to diagnose and
>>>>
>>>> fix
>>>>>>
>>>>>> the issue ASAP. I don't have an answer yet ... but wanted to let
>>>>
>>>> you
>>>>>>
>>>>>> know of the issue.
>>>>>>
>>>>>> I'll keep everyone posted on the progress.
>>>>>>
>>>>>>
>>>>>> Thanks & regards. =ppy
>>>>>>
>>>>>> P.S. ... btw, I have deployed the [oor-users] mailing list, as
>>>>
>>>> agreed
>>>>>>
>>>>>> earlier, in time for your class, Ken
>>>>>> - ref.
>>>>
>>>> http://ontolog.cim3.net/forum/oor-forum/2009-09/msg00001.html
>>>>>>
>>>>>> -- (08)
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