Ontolog invited Speaker Presentation - Professor Mark Musen - Thu 2007.12.06 (15RM)
- Invited Speaker: Professor Mark Musen, Head of the Stanford Center for Biomedical Informatics Research (formerly Stanford Medical Informatics) and PI of the National Center for Biomedical Ontology research consortium (Stanford University, California, USA.) (15Z9)
- Talk entitled: "If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies" (15ZA)
- Archive: slides & audio recording of the session (mp3) (15ZB)
Conference Call Details: (15ZC)
- Date: Thursday, December 6, 2007 (15ZD)
- Start Time: 10:30am PST / 1:30pm EST / 18:30 UTC (15ZE)
- ref: World Clock (15ZF)
- Expected Call Duration: 1.5~2.0 hours (15ZG)
- Dial-in Number: (15ZH)
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- Direct call from from Skype: +990008275823120 (15ZT)
- Shared-screen support (VNC session) will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/ (15ZU)
- view-only password: "ontolog" (15ZV)
- if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts. (15ZW)
- people behind corporate firewalls may have difficulty accessing this. If that is the case, please download the slides below and running them locally. The speaker will prompt you to advance the slides during the talk. (15ZX)
- Please review our Virtual Session Tips and Ground Rules - see: VirtualSpeakerSessionTips (15ZY)
- see below regarding our in-session Q & A process (15ZZ)
- Special appreciation to Professor Barry Smith for suggesting that we invite Professor Musen over to make this presentation on NCBO to the community (back in late Feb. 2007) ... It's finally happening, Barry! Thanks. =ppy (161V)
- RSVP to peter.yim@cim3.com appreciated. (1600)
- This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2007_12_06 (1601)
- Please note that this session will be recorded, and the audio archive is expected to be made available as open content to our community membership and the public at-large under our prevailing open IPR policy. (1602)
Attendees (1603)
- Registered Particpants & Attendees: (1604)
- MarkMusen (1606)
- PeterYim (1607)
- MarkGreaves (161S)
- Ravi Sharma (Vangent) (161T)
- My Coyne (Bioinformatics Consultant for NDAR/NIH) (161U)
- Mike Cummens (Northrop Grumman) (161W)
- Walt Truszkowski (NASA) (161X)
- JyotishmanPathak (161Y)
- BarrySmith (161Z)
- AndrewPotter (1620)
- LaVern Pritchard (Pritchard Law Webs) (1621)
- BobSmith (1623)
- Calvin Johnson (HPCIO/DCB/CIT/NIH) (1624)
- Tomer Altman (SRI) (1625)
- NancyWiegand (162A)
- Lynn Young (BIMAS/CBEL/DCB/CIT/NIH) (162V)
- Su Gruszin (The University of Adelaide, Sydney, Australia) (165V)
- Steve Chervitz (Affymetrix) (165W)
- BiswanathDutta (165X)
- Elgar Pichler (AstraZeneca) (165Y)
- Joseph Tennis (Unviversity of Washington, Seattle, WA) (1608)
- Dona Mommsen (University of Fribourg, Switzerland) (165Z)
- Sergey Krikov (University of Utah) (1660)
- Robert Dourandish (Quimba) (1691)
- Bruce Bray (University of Utah) (1661)
- Bettina Schimanski (Sandia National Labs) (1662)
- Patrick Dunn (Northrop Grumman IT) (1663)
- Ann Houston (Grammarsmith) (166B)
- BillJarrold (168J)
- Brian Doherty (VA R&D, CSP Palo Alto, CA) (168Z)
- Jennifer Cai (U.T. Southwestern Medical Center, Dallas, TX) (1690)
- Albert Burger (HGU/MRC; Heriot-Watt University; Edinburgh, UK) (1692)
- Dan Reininger (Semandex Networks) (1693)
- DougHolmes (16D7)
- SteveRay (16D8)
- MarcoNeumann (16D9)
- ZhanjunLi (16DA)
- RexBrooks (16DB)
- CecilLynch (16DC)
- JohnSowa (16DD)
- RichKeller (16DE)
- DavidMartin (16DF)
- AtillaElci (16DI)
- KGoodier (16DJ)
- KenBaclawski (16DK)
- Harry Harlow (Eli Lilly) (16DL)
- GaryBergCross (16DM)
- FrankAlvidrez (16DN)
- Nishanth Marthandan (University of Texas Southwestern Medical Center at Dallas) (16DO)
- SusanTurnbull (16DP)
- Christopher Brewster (University of Sheffield, UK) (16DQ)
- DavidHay (16DR)
- Ross Dahman (Huntleigh Technology Group) (16DS)
- DilvanMoreira (16DT)
- FrankOlken (16DU)
- Mustafa Jarrar (1A4I)
- PatCassidy (16DW)
- MichaelUschold (16DY)
- JimSchoening (16DZ)
- Thomas Wetter (University of Heidelberg, Germany) (16E0)
- Michael Bobak (16E1)
- ...(to register for participation, please add your name (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation.)... (1609)
- Regrets: (160A)
Agenda & Proceedings (160B)
- Professor Mark Musen, Head of the Stanford Center for Biomedical Informatics Research (formerly Stanford Medical Informatics) and PI of the National Center for Biomedical Ontology research consortium, giving a talk on: "If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies." (160C)
[Professor Mark Musen] (160E)
. . Title: If we build it, will they come? Social-engineering of new technology to disseminate biomedical ontologies (160F)
The National Center for Biomedical Ontology (NCBO) is developing a wide range of Web-based services to assist end users in browsing, evaluation, and use of ontologies. These features include capabilities for which there is no specific correlate in current technology for ontology management. These features include online community-based review and annotation of ontologies, support for declaring mappings between ontologies, and the push of information about ontology changes directly to a user's desktop. These novel capabilities for ontology access and use have the potential to address pressing end-user needs and to engage entire research communities in the development, evolution, and evaluation of controlled terminologies and ontologies. Our work offers possibilities for the creation of a new kind of collaborative, community-based approach to the dissemination and use of ontologies. The key question is whether our user community is ready for such capabilities. The issue is one of sociology and culture as much as it is one of technology. This talk will describe the BioPortal for access to biomedical ontologies online, and will outline our future plans for this novel, Web-based resource. (15WT)
- Session Format and Agenda: (160H)
- this will be virtual session over a phone conference setting, augmented by shared computer screen support (160I)
- The session will start with a brief self-introduction of the attendees (~15 min.) [We will be skipping this if there are more than 20 participants.] (160J)
- Introduction of the invited speaker (160K)
- Presentation by our invited speaker - MarkMusen (~60 min.) (160L)
- Q&A and Open discussion (~30 min.) [Kindly identify yourself before speaking.] (160M)
- Bio of Professor Mark Musen: (160N)
Dr. Mark Musen is Professor of Medicine (Medical Informatics) and Computer Science (by courtesy) at Stanford University, where he is head of the Stanford Center for Biomedical Informatics Research (formerly Stanford Medical Informatics). Among numerous other research positions, he is the Principal Investigator of the National Center for Biomedical Ontology research consortium. He holds an MD from Brown University and a Ph.D. from Stanford. (160O)
Dr. Musen conducts research related to intelligent systems, the Semantic Web, reusable ontologies and knowledge representations, and biomedical decision support. His long-standing work on a system known as Protégé has led to an open-source technology now used by thousands of developers around the world to build intelligent computer systems and new computer applications for e-commerce and the Semantic Web. He is known for his research of the application of intelligent computer systems to assist health-care workers in guideline-directed therapy and in management of clinical trials. Dr. Musens group has begun to explore the use of knowledge-based technologies to monitor a variety of data sources in an effort to detect incipient epidemics, including those caused by possible acts of bioterrorism. (160P)
In 1989 Dr. Musen received the Young Investigator Award for Research in Medical Knowledge Systems from the American Association of Medical Systems and Informatics. He received a Young Investigator Award from the National Science Foundation in 1992. He has served on the Biomedical Library Review Committee of the National Library of Medicine and as an advisor to many academic and industrial groups concerned with the development of advanced information technology. Dr. Musen sits on the editorial boards of several journals related to medical informatics and computer science. He is co-editor of the Handbook of Medical Informatics (Springer-Verlag, 1997) and co-editor-in-chief of the journal Applied Ontology. (160Q)
- Professor Musen's prepared slides can be accessed by pointing your web browsers to: (160R)
- http://ontolog.cim3.net/file/resource/presentation/MarkMusen_20071206/NCBO--MarkMusen_20071206.pdf (160S)
- links to additional relevant resources: (160T)
- (please post any additional resources here) (160U)
- Any material outside of the prepared presentation, if they are called up during the session, may be shared under the VNC session detailed above (160V)
Questions, Answers & Discourse: (160W)
- Please mute your phone, by pressing "*2" on your phone keypad, when the talk is in progress. To un-mute, press "*3" (160X)
- If you want to speak or have questions or remarks to make, please "raise your hand (virtually)" by pressing "11" on your phone keypad. You may speak when acknowledged by the speaker or the session moderator. (160Y)
- You can also type in your questions or comments through the browser based queue management chat tool by: (160Z)
- pointing a separate browser window (or tab) to http://webconf.soaphub.org/conf/room and enter: Room: "ontolog_20071206" & My Name: e.g. "JaneDoe" (1610)
- or point your browser to: http://webconf.soaphub.org/conf/room/ontolog_20071206 (1611)
- instructions: once you got access to the page, click on the "settings" button, and identify yourself (by modifying the Name field). You can indicate that you want to ask a question verbally by clicking on the "hand" button, and wait for the moderator to call on you; or, type and send your question into the chat window at the bottom of the screen. (1612)
- For those who have further questions or remarks on the topic, please post them to the [ontolog-forum] so that everyone in the community can benefit from the discourse. (1613)
- Session ended 2007.12.06 12:33 pm PST (1615)
Audio Recording of this Session (1616)
- To download the audio recording of the session, click here (1619)
- the playback of the audio files require the proper setup, and an MP3 compatible player on your computer. (161A)
- Conference Date and Time: 06-Dec-2007 10:36am~12:33pm Pacific Time (161B)
- Duration of Recording: 1 Hour 31 Minutes (161C)
- Recording File Size: 10.35 MB (in mp3 format) (161D)
- Telephone Playback (161E)
- Prior to the Expiration Date of 06-Jan-2008 0:00 AM PDT, one can call-in and hear the telephone playback of the session. (161F)
- Playback Dial-in Number: (161G)
- US: 1-605-475-8599 (long distance costs apply) (161H)
- UK: 0870 738 0768 (long distance costs apply) (161I)
- Skype: +990008271111 (161J)
- non-Skype callers from other countries can dial into either the US or UK number for the playback (long distance costs apply) (161K)
- Conference ID: 5823120# (161L)
- Recording Reference Number: 133566# (161M)
- suggestions: (161N)
- its best that you listen to the session while having the slide presentation opened in front of you. You'll be prompted to advance slides by the speaker. (161O)