NIST-Ontolog-NCOR Mini-Series: Ontology Measurement and Evaluation (Session-2) - Thu 21-Dec-2006 (RUV)
- Session Chair: Dr. Steven Ray (NIST) (RX9)
- Invited Speaker: Professor Barry Smith (NCOR) (RUX)
- Topic: "Ontology Evaluation in Biomedicine: The OBO Foundry - A Gold Standard Approach to Ontology Evaluation" (RUW)
Conference Call Details (RUY)
- Date: Thursday, December 21, 2006 (RUZ)
- Start Time: 10:30am PST / 1:30pm EST / 7:30pm CET / 18:30 GMT/UTC (RV0)
- ref: World Clock (RV1)
- Expected Call Duration: 1.5~2.0 hours (RV2)
- Dial-in Number: (RV3)
- from a telephone (US): +1-712-432-4990 (Iowa, USA) (RV4)
- from a phone (Europe): 0870-119-1313 (UK) or 01805 00 7620 (Germany) (RV5)
- callers from other countries please dial into either one of the US or European numbers (RV6)
- Conference ID: "5823120#" (RV7)
- Direct call from from Skype: +990008275823120 (RV8)
- Shared-screen support (VNC session) will be started 5 minutes before the call at: http://vnc2.cim3.net:5800/ (RV9)
- view-only password: "ontolog" (RVA)
- if you plan to be logging into this shared-screen option (which the speaker may be navigating), and you are not familiar with the process, please try to call in 5 minutes before the start of the session so that we can work out the connection logistics. Help on this will generally not be available once the presentation starts. (RVB)
- people behind corporate firewalls may have difficulty accessing this. If that is the case, please download the slides below and runing them locally. The speaker will prompt you to advance the slides during the talk. (RVC)
- Please review our Virtual Session Tips and Ground Rules - see: VirtualSpeakerSessionTips (RVD)
- see below regarding our in-session Q & A process (S0F)
- RSVP to peter.yim@cim3.com appreciated. (RVE)
- This session, like all other Ontolog events, is open to the public. Information relating to this session is shared on this wiki page: http://ontolog.cim3.net/cgi-bin/wiki.pl?ConferenceCall_2006_12_21 (RVF)
- Please note that this session will be recorded, and the audio archive is expected to be made available as open content to our community membership and the public at-large under our prevailing open IPR policy. (RVG)
Attendees (RVH)
- Attended: (RVI)
- SteveRay (RVK)
- BarrySmith (RVL)
- PeterYim (RVM)
- Mustafa Jarrar (1A4Q)
- AtillaElci (S6I)
- PaulKoch (S8T)
- MitchRinger (S09)
- KenBaclawski (S8U)
- DougHolmes (S5W)
- JeffreySchiffel (S0E)
- ItzhakRoth (S6F)
- BobSmith (S8S)
- BillMcCarthy (S8V)
- ZhanjunLi (S07)
- AdrianWalker (S08)
- AlanRuttenberg (S8W)
- MonicaRuck (S4F)
- LisaColvin (S06)
- Also expected (and who may have joined us after the roll call): (RVJ)
- PatrickDurusau (S0H)
- David Landry (Amgen) (S0I)
- (RVN)
- ... to register for participation, please add your name (plus your affiliation, if you aren't already a member of the community) above, or e-mail <peter.yim@cim3.com> so that we can reserve enough resources to support everyone's participation. ... (RVO)
- Regrets: (RVP)
- KurtConrad (traveling) (S6J)
- NabonitaGuha (S6X)
- EdDodds (S8N)
Background (RVQ)
This is the second event of a mini-series of talks and discussions that revolve around the topic: "Ontology Measurement and Evaluation" during which this community will explore the landscape, issues and solutions relating to the measurement, evaluation, quality and testing of ontologies. (RVR)
This is a Joint NIST-Ontolog-NCOR initiative. A planning meeting for this mini-series took place on 22-Aug-2006, during which the scope and plans for the program was discussed among members of the community. Dr. Steven Ray, who is the Chief of NIST's Manufacturing Systems Integration Division (MSID), a long time member of the Ontolog community, as well as the convener of NCOR's Ontology Evaluation Committee, was invited to champion the program. This series is expected to last about 6 months during which invited speaker and technical discussion events will be featured (at the rate of about one event per month). (RVS)
See also: OntologyMeasurementEvaluation (the 'project' homepage for this mini-series) (RVT)
Agenda & Proceedings: "Ontology Measurement and Evaluation" - Mini-series Session-2 (RVU)
Professor Barry Smith, from the University at Buffalo, presenting: "Ontology Evaluation in Biomedicine: The OBO Foundry - A Gold Standard Approach to Ontology Evaluation" (RVV)
- Session Format: this is a virtual session conducted over an augmented conference call (RVW)
- 1. Opening - SteveRay (RVX)
- 2. we'll go around with a self-introduction of participants (10~15 minutes) - we'll skip this if we have moe than 20 participants (in which case, it will be best if members try to update their namesake pages on this wiki prior to the call so that everyone can get to know who's who more easily.) (RVY)
- 2. Introduction of the invited speaker by Dr. Steven Ray, our program lead of this mini-series (RVZ)
- 3. Invited Speaker Presentation (~60 minutes) (RW0)
- 5. Q & A and Open discussion by all participants (~30 minutes) (RW1)
- 7. Summary / Conclusion / Follow-up (SteveRay - 5 minutes) (RW2)
Topic: "Ontology Evaluation in Biomedicine: The OBO Foundry - A Gold Standard Approach to Ontology Evaluation" by Professor Barry Smith (RW3)
[a picture of Professor Barry Smith] (RW4)
- Abstract (by BarrySmith): (RW5)
The OBO Foundry (http://obofoundry.org) is a subset of ontologies drawn from the Open Biomedical Ontologies library, whose developers have agreed to adhere to an evolving set of principles governing best practices in ontology development. We describe initial lessons learned from this collaborative experiment as concerns ontology evaluation and evolution. (RW6)
- Bio of Professor Barry Smith: (RW7)
Barry Smith is Director of the National Center for Ontological Research (NCOR), and Julian Park Distinguished Professor of Philosophy at the University at Buffalo, NY, USA. He is also the Director of the Institute for Formal Ontology and Medical Information Science at the Saarland University, Saarbrücken, Germany. (RW8)
Professor Smith has authored some 400 scientific publications, including 15 authored or edited books. He is also editor of The Monist: An International Quarterly Journal of General Philosophical Inquiry. His research has been funded by the US, Swiss and Austrian National Science Foundations, the Volkswagen Foundation, and the European Union. In 2002 he received, in recognition of his scientific achievements, the 2.2 Million Euro Wolfgang Paul Award of the Alexander von Humboldt Foundation. (RW9)
Professor Smiths current research focus is ontology and its applications in biomedicine and biomedical informatics, including a variety of projects relating to biomedical terminologies and electronic health records. He is also collaborating with Hernando de Soto, Director of the Institute for Liberty and Democracy in Lima, Peru, on the ontology of property rights and social development. (RWA)
- Professor Smith's prepared slides can be accessed by pointing your web browsers to: (RWB)
- http://ontolog.cim3.net/file/work/OntologyMeasurementEvaluation/2006-12-21_OntologyEvaluationInBiomedicine/OBO-Foundry--BarrySmith_20061221.ppt (RWC)
- links to additional relevant resources: (RWD)
- see: OntologyMeasurementEvaluation (the 'project' homepage for this mini-series) (RWE)
- The OBO Foundry - http://obofoundry.org (RWF)
- Any material outside of the prepared presentation, if they are called up during the session, may be shared under the VNC session detailed above (RWG)
Questions, Answers & Discourse: (RWH)
- Please mute your phone, by pressing "*2" on your phone keypad, when the talk is in progress. To un-mute, press "*3" (S0G)
- If you want to speak or have questions or remarks to make, please "raise your hand (virtually)" by pressing "11" on your phone keypad. You may speak when acknowledged by the speaker or the session moderator. (RWI)
- experimental: try using the queue management chat tool (RWJ)
- point a separate browser window (or tab) to http://webconf.soaphub.org/conf/room and enter: Room: "ontolog_20061221" & My Name: e.g. "JaneDoe" (RWK)
- or point your browser to: http://webconf.soaphub.org/conf/room/ontolog_20061221 (RWL)
- instructions: once you got access to the page, click on the "settings" button, and identify yourself (by modifying the Name field). You can indicate that you want to ask a question verbally by clicking on the "hand" button, and wait for the moderator to call on you; or, type and send your question into the chat window at the bottom of the screen. (RWM)
- For those who have further questions or remarks on the topic, please post them to the [ontolog-forum] so that everyone in the community can benefit from the discourse. (RWN)
- ... More Questions (RWO)
- Session ended 2006.12.21 12:03 pm PST (RWP)
Audio Recording of this OntologyMeasurementEvaluation BarrySmith Session (RWQ)
- To download the audio recording of the presentation, click here (RWS)
- the playback of the audio files require the proper setup, and an MP3 compatible player on your computer. (RWT)
- Conference Date and Time: Dec. 21, 2006 10:36am~12:03pm Pacific Standard Time (RWU)
- Duration of Recording: 1 Hour 22.5 Minutes (RWV)
- Recording File Size: 9.7 MB (in mp3 format) (RWW)
- Telephone Playback Expiration Date: Jan. 21, 2006 0:00 AM Pacific Standard Time (RWX)
- Prior to the above Expiration Date, one can call-in and hear the telephone playback of the session. (RWY)
- Playback Dial-in Number: (RWZ)
- US: 1-712-432-4999 (long distance costs apply) (RX0)
- UK: 0870 119 2349 (long distance costs apply) (RX1)
- Skype: +990008271111 (RX2)
- non-Skype callers from other countries can dial into either the US or UK number for the playback (long distance costs apply) (RX3)
- Conference ID: 5823120# (RX4)
- Recording Reference Number: 58710# (RX5)
- suggestions: (RX6)
- its best that you listen to the session while having the slide presentation opened in front of you. You'll be prompted to advance slides by the speaker. (RX7)