BillHogan

Bill Hogan    (24OP)

William R. Hogan, MD, MS
Professor, Health Outcomes and Policy
Director of Biomedical Informatics, Clinical and Translational Science Institute
University of Florida

email: hoganwr-at-ufl.edu    (24OQ)

Ontology-relevant Education / Background / Experience    (2501)

• 1996 M.S. in Intelligent Systems, University of Pittsburgh, Pittsburgh, PA    (250E)
• 2000-2002 Medical Director of Knowledge Modeling, Health Language Inc, Aurora, CO    (250F)
• 2007-2009 Director, Medical Vocabulary Services, UPMC, Pittsburgh, PA    (250G)
• 2009-2013 Associate Professor and Chief, Division of Biomedical Informatics, UAMS, Little Rock, AR    (2502)
• 2013-2014 Professor and Chief, Division of Biomedical Informatics, UAMS, Little Rock, AR    (3XZK)
• 2014-present Professor and Director, Health Outcomes and Policy, Clinical and Translational Sciences Institute, University of Florida, Gainesville, FL    (4DZ4)

Active Ontology-development Efforts    (2503)

• Ontology for General Medical Science: http://code.google.com/p/ogms/    (2504)
• Ontology of Medically Related Social Entities: http://code.google.com/p/omrse/    (2KBV)
• Proper Name Ontology: http://code.google.com/p/proper-name-ontology/    (30G5)
• Substance Intolerance Ontology    (2E11)
• Information Artifact Ontology: http://code.google.com/p/information-artifact-ontology/    (2KBW)
• Apollo-SV: http://code.google.com/p/apollo    (3K1L)
• The Drug Ontology: https://ontology.atlassian.net/wiki/display/DRON/    (3TPO)
• The Geographical Entities Ontology: https://ontology.atlassian.net/wiki/display/GEO/    (3TQ1)

Ontology-related Publications    (24ZZ)

1. Lustgarten JL, Kimmel C, Ryberg H, Hogan W. EPO-KB: A searchable knowledge base of biomarker to protein links. Bioinformatics. 2008 Jun 1;24(11):1418-9. Epub 2008 Apr 9.    (2500)
2. Hogan WR. Towards an ontological theory of substance intolerance and hypersensitivity. Journal of Biomedical Informatics, 2010. In press. http://dx.doi.org/10.1016/j.jbi.2010.02.003    (2DAL)
3. Hogan WR. To what entities does an ICD-9-CM code refer? A realist approach. Proceedings of the 13th Annual Bio-Ontologies Meeting, 2010:60-63. http://www.bio-ontologies.org.uk/programme/Bio-Ontologies-2010-Handout-Formatted.pdf    (2F53)
4. Hogan WR, Garimalla S, Tariq SA. Representing the reality underlying demographic data. Proceedings of the International Conference on Biomedical Ontology (July 28-30, 2011, Buffalo, NY):147-152. Available at: http://icbo.buffalo.edu/ICBO-2011_Proceedings.pdf    (30G2)
5. Brochhausen M, Fransson MN, Eriksson M, Merino-Martinez R, Norlin L, Kjellqvist S, Anderberg M, Hogan WR, Litton J-E. Developing an ontology for sharing biobank data based on the BBMRI minimum data set MIABIS. Ontologies in Biomedicine and Life Sciences (OBML) 2012. (September 27-18, 2012, Dresden, Germany). Available in: http://www.onto-med.de/obml/ws2012/obml2012report.pdf    (3K1K)
6. Hogan WR, Hanna J, Joseph E, Brochhausen M. Towards a Consistent and Scientifically Accurate Drug Ontology. International Conference on Biomedical Ontology 2013 (July 8-9, 2013, Montreal Canada). http://www.unbsj.ca/sase/csas/data/ws/icbo2013/papers/research/icbo2013_submission_40.pdf    (3TPP)
7. Hanna J, Joseph E, Brochhausen M, and Hogan W. Building a Drug Ontology based on RxNorm and Other Sources. International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013), colocated with International Conference on Biomedical Ontology (July 7, 2013, Montreal Canada).    (3VZS)
8. Hall R, Hanna J, and Hogan W. Maintaining the Drug Ontology: an Open-source, Structured Product Label API for the JVM. International Workshop on Vaccine and Drug Ontology Studies (VDOS 2013), colocated with International Conference on Biomedical Ontology (July 7, 2013, Montreal Canada).    (3VZT)
9. Brochhausen M, Fransson MN, Kanaskar N, Eriksson M, Merino-Martinez R, Hall RA, Norlin L, Kjellqvist S, Hortlund M, Topaloglu U, Hogan WR, Litton JE. Developing a semantically rich ontology for the biobank-administration domain. Journal of Biomedical Semantics, 2013 Oct 8;4(1):23. doi: 10.1186/2041-1480-4-23.    (3TPQ)
10. Wagner MM, Levander JD, Brown S, Hogan WR, Millett N, and Hanna J. Apollo: Giving application developers a single point of access to public health models using structured vocabularies and Web services. In Proceedings of the American Medical Informatics Association Annual Fall Symposium 2013 Nov 16;2013:1415-24.    (3VZR)
11. Hanna J, Joseph E, Brochhausen M, Hogan WR. "Building a drug ontology based on RxNorm and other sources". Journal of Biomedical Semantics, 2013;4(1):44. doi: 10.1186/2041-1480-4-44.    (4DZ3)

Ontology-related Posters    (24ZU)

1. Hogan WR. Aligning the Top-Level of SNOMED-CT with Basic Formal Ontology. Presented at KR-MED 2008: Representing and sharing knowledge using SNOMED, Phoenix, AZ, June 1, 2008. Available at: http://precedings.nature.com/documents/2373/version/1    (24ZV)
2. Hogan WR. Aligning the Top-Level of SNOMED-CT with Basic Formal Ontology. Presented at Science 2008: On Our Watch. University of Pittsburgh, Pittsburgh, PA. October 2, 2008.    (24ZW)
3. Lustgarten JL, Visweswaran S, Grover H, Kimmel CP, Ryberg H, Bowser RP, Gopalakrishnan V, Hogan WR. Using a novel resource to decrease proteomic biomarker identification time. Presented at the AMIA Fall Symposium: Biomedical and Health Informatics – From Foundations to Applications to Policy, November 10, 2008, Washington DC.    (24ZX)
4. Hogan WR. What in an ‘is a’ link? Presented at the International Conference on Biomedical Ontology, July 24-26, 2009, Buffalo, NY. Available at: http://precedings.nature.com/documents/3462/version/1    (24ZY)
5. Hogan WR. A call to translational ontology. Proceedings of MCBIOS 2011, p 20. Available at: http://www.ece.tamu.edu/~ulisses/MCBIOS2011_Oral_Presentation_Abstracts.pdf. Presented at MCBIOS, College Station, TX, April 1, 2011    (30G3)
6. Hogan WR, Garimalla S, Tariq SA, Ceusters W. Representing local identifiers in a referent-tracking system. In Proceedings of the International Conference on Biomedical Ontology (July 28-30, 2011, Buffalo, NY):252-254. Available at: http://icbo.buffalo.edu/ICBO-2011_Proceedings.pdf.    (30G4)
7. Hanna J, Chen C, Crow WA, Hall R, Liu J, Pendurthi T, Schmidt T, Jennings SF, Brochhausen M, Hogan W. Simplifying MIREOT: A MIREOT Protégé Plugin. Presented at the International Semantic Web Conference, Boston, Massachusetts, November 13, 2012. NIHMSID: 446691.    (3TPR)
8. Hogan WR, Brochhausen M, Smith B. A call to urgent action on standard ontologies for translational science. Presented at: Translational Science 2013, Washington DC, April 18, 2013.    (3TPS)
9. Chen C, Hanna J, Talburt JR, Brochhausen M, Hogan WR. A Demonstration of Entity Identity Information Management Applied to Demographic Data in a Referent Tracking System. Presented at International Conference on Biomedical Ontology 201, Montreal, Quebec, 2013. Included in ICBO 2013 proceedings, pp 135-136. Abstract available at: http://www2.unb.ca/csas/data/ws/icbo2013/papers/software/icbo2013_submission_61.pdf.    (3XZM)
10. Slaughter L, Brochhausen M, Hogan W, Nytrø, Ø. The Core Clinical Protocol Ontology (C2PO): A Realist Ontology for Representing the Recommendations within Clinical Guidelines. Presented at Medinfo 2013, Copenhagen, Denmark, August 21, 2013. Abstract available at: http://ebooks.iospress.nl/publication/34213.    (3XZL)