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[oor-forum] FW: Long overdue crosswalk between OMV and CTS2

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Cc: decorons@xxxxxxxxxxxx, whetzel@xxxxxxxxxxxx, ohira_riki@xxxxxxx, turner.stuart@xxxxxxxxx
From: "Brian Davis" <bdavis@xxxxxxxxxxx>
Date: Tue, 22 Nov 2011 13:37:55 -0500
Message-id: <C1DC2070D640C54F9D048DBBB81E454F7AD492@xxxxxxxxxxxxxxxxxxxxxxxxxxxx>
Hi all,    (01)

Regarding the questions about Harold's and Sherri's mappings to OMV
(from today's OOR call):    (02)

Harold recently mapped OMV to CTS2; the results are here:
http://informatics.mayo.edu/cts2/index.php/CTS2_and_OMV    (03)

He refers to an analysis Stuart Turner had done examining whether RxNorm
(as specific instance of a terminology) actually has the metadata as
outlined by OMV and that analysis is here:
https://wiki.nci.nih.gov/display/VCDE/OMV+Metadata+for+RxNorm    (04)

Sherri has mapped NCBO to OMV to OMV+ (the ontology representation
working group's ad hoc, temporary name for the version/extension to OMV)
to NCBO Bioportal. And that is here:
https://wiki.nci.nih.gov/pages/viewpage.action?pageId=53020090    (05)

Thx.    (06)

Brian
++++++++++++++++++++++++++
Brian Davis, Ph. D.
caBIG-VCDE Workspace Facilitator
3rd Millennium, Inc.
bdavis@xxxxxxxxxxx
303-997-6580
++++++++++++++++++++++++++    (07)

-----Original Message-----
From: Solbrig, Harold R. [mailto:Solbrig.Harold@xxxxxxxx] 
Sent: Monday, November 14, 2011 11:01 AM
To: Warzel, Denise (NIH/NCI) [E]; Wright, Larry (NIH/NCI) [E]; Stuart
Turner; Ohira, Riki
Cc: stuart.bell@xxxxxxxxxxx; Grace Stafford; Trish Whetzel; Bleeker,
Troy C.; hmin3@xxxxxxx; De Coronado, Sherri (NIH/NCI) [E];
noy@xxxxxxxxxxxx; Brian Davis; Freimuth, Robert, Ph.D.; Kiefer, Richard
C. (Rick) II; Stuart Bell
Subject: RE: Long overdue crosswalk between OMV and CTS2    (08)

Folks,    (09)

I've updated the web page to include the RxNorm example that stuart and
others put together last year.  If you scroll to the bottom you can
fetch the samples - either directly from the CTS2 service or as XML
embedded in the Wiki.  Note that some browsers do some odd things with
the XML that comes out of the service - you may need to download it
and/or view the page source to see everything that is there.    (010)

Harold    (011)

-----Original Message-----
From: Warzel, Denise (NIH/NCI) [E] [mailto:warzeld@xxxxxxxxxxxx]
Sent: Monday, November 14, 2011 11:32 AM
To: Solbrig, Harold R.; Wright, Larry (NIH/NCI) [E]; Stuart Turner;
Ohira, Riki
Cc: stuart.bell@xxxxxxxxxxx; Grace Stafford; Trish Whetzel; Bleeker,
Troy C.; hmin3@xxxxxxx; De Coronado, Sherri (NIH/NCI) [E];
noy@xxxxxxxxxxxx; Davis, Brian; Freimuth, Robert, Ph.D.; Kiefer, Richard
C. (Rick) II; Stuart Bell
Subject: Re: Long overdue crosswalk between OMV and CTS2    (012)

Harold,    (013)

This is excellent input and will be very valuable should the OMV be
taken forward for ISO standardization!  Thanks for documenting this!    (014)


On 11/10/11 4:47 PM, "Harold Solbrig" <Solbrig.Harold@xxxxxxxx> wrote:    (015)

Folks,    (016)

The first part of a three-part deliverable can be found here:    (017)

http://informatics.mayo.edu/cts2/index.php/CTS2_and_OMV    (018)

I am will have the CTS2 representation of
https://wiki.nci.nih.gov/display/VCDE/OMV+Metadata+for+RxNorm available
by the end of the day and plan to have a delta between CTS2/OMV and
BioPortal available by Monday at the latest.    (019)

Harold Solbrig    (020)


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