[oor-dev] Fwd: Re: [bioontology-support] Bioportal installation

[Peter Yim <peter.yim@xxxxxxxxx>]

Fyi ...

---------- Forwarded message ----------
From: "Paul R Alexander" <palexander@xxxxxxxxxxxx>
Date: Aug 20, 2012 5:51 PM
Subject: Re: [bioontology-support] Bioportal installation
To: "Konstantinos Giannoutakis" <kgiannou@xxxxxx>
Cc: "support@xxxxxxxxxxxxxxx Support" <support@xxxxxxxxxxxxxxx>

Konstantinos,

We don't support installing the software without the use of our Appliance. However, the all of NCBO's software is open source so you can definitely give it a shot. Here's information on the main pieces of software that we write. You'll also need Tomcat, Ruby, Rails, MySQL, and 4store.

https://bmir-gforge.stanford.edu/gf/project/bioportal_core/scmsvn/?action="">
https://bmir-gforge.stanford.edu/gf/project/bioportalui/scmsvn/?action="">
https://bmir-gforge.stanford.edu/gf/project/obs/scmsvn/?action="">

There should be some documentation in the /docs/ folder of each repository.

Paul R Alexander
Senior Software Engineer
NCBO BioPortal
Stanford Center for Biomedical Informatics Research

On 8/20/12 5:56 AM, Konstantinos Giannoutakis wrote:

Hi again,

I downloaded the file from the page you mentioned, and tried to open the .ovf file with VirtualBox manager, but when it starts the following error appears:

This kernel requires an x86-64 CPU, but only detected an i686 CPU.
Unable to boot - please use a kernel appropriate for your CPU.


My CPU is an Intel i5.

Is there any way to install manually the bioportal framework on a PC without using ready images?

Thank you


On 17/8/2012 6:52 μμ, Trish Whetzel wrote:

Certainly! The page at: http://bioportal.bioontology.org/virtual_appliance has links for the download as well as links for documentation on installing and working with the Appliance. If you have any questions about the install, please either review the support archives or email support@xxxxxxxxxxxxxxx. 

For our record keeping, can you tell us a bit about the reason for requesting the Virtual Appliance? For example, do you plan to use the Appliance for ontologies outside of the biomedical domain or do you plan to use the Annotator for private/proprietary data?

Thanks!

Trish 

On Aug 17, 2012, at 12:18 AM, Konstantinos Giannoutakis wrote:

Hi,

My username in BioPortal is "kgiannou". Thank you very much!!!

Best regards




On 16/8/2012 8:01 μμ, Trish Whetzel wrote:

Please send me your BioPortal username. We can then provide this account access the download page.

Trish 

Trish Whetzel, PhD

Outreach Coordinator

The National Center for Biomedical Ontology

Ph: 650-721-2378

http://www.bioontology.org

"Like" NCBO on Facebook: http://on.fb.me/bioontology

Follow NCBO on Twitter: http://twitter.com/#!/bioontology

Join in Discussions on LinkedIn: http://linkd.in/ncbo-group

On Aug 16, 2012, at 7:23 AM, Konstantinos Giannoutakis wrote:

Hi,

I am willing to install Bioportal in my local machine, thus I would like to ask you for a "Virtual Appliance" as stated in the page:
http://www.bioontology.org/wiki/index.php/Category:NCBO_Virtual_Appliance

Thank you very much!

--
Konstantinos Giannoutakis, PhD
Research Associate
Informatics and Telematics Institute
Centre for Research and Technology Hellas
6th Km Charilaou-Thermi Road
GR 57001
Thermi, Thessaloniki, Greece
www.iti.gr/~kgiannou

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