OOR sandbox is up and running. I restarted the server and all services.
Regards,
--Tejas
On Fri, Jan 7, 2011 at 10:28 AM, Peter Yim <peter.yim@xxxxxxxx> wrote:
I just tried pointing my browser to the OOR sandbox at:
http://sandbox.oor.net/ontologies
and found that it isn't working properly.
It is returning a "NoMethodError in OntologiesController#index "
//
undefined method `io' for #<Timeout::Error: execution expired>
RAILS_ROOT: /opt/oor/ui
Application Trace | Framework Trace | Full Trace
/opt/oor/ui/lib/BioPortalRestfulCore.rb:696:in `get_xml'
/opt/oor/ui/lib/BioPortalRestfulCore.rb:188:in `getOntologyList'
/opt/oor/ui/app/models/data_access.rb:266:in `send'
/opt/oor/ui/app/models/data_access.rb:266:in `cache_pull'
/opt/oor/ui/app/models/data_access.rb:41:in `getOntologyList'
/opt/oor/ui/app/controllers/ontologies_controller.rb:15:in `index'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:1331:in
`send'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:1331:in
`perform_action_without_filters'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/filters.rb:617:in
`call_filters'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/filters.rb:610:in
`perform_action_without_benchmark'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/benchmarking.rb:68:in
`perform_action_without_rescue'
/usr/lib64/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/core_ext/benchmark.rb:17:in
`ms'
/usr/lib64/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/core_ext/benchmark.rb:10:in
`realtime'
/usr/lib64/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/core_ext/benchmark.rb:17:in
`ms'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/benchmarking.rb:68:in
`perform_action_without_rescue'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/rescue.rb:160:in
`perform_action_without_flash'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/flash.rb:146:in
`perform_action'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:532:in
`send'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:532:in
`process_without_filters'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/filters.rb:606:in
`process'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:391:in
`process'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:386:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/routing/route_set.rb:437:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:87:in
`dispatch'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:121:in
`_call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:130:in
`build_middleware_stack'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:29:in
`call'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:29:in
`call'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/connection_adapters/abstract/query_cache.rb:34:in
`cache'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:9:in
`cache'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:28:in
`call'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/connection_adapters/abstract/connection_pool.rb:361:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/string_coercion.rb:25:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/head.rb:9:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/methodoverride.rb:24:in `call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/params_parser.rb:15:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/session/cookie_store.rb:93:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/failsafe.rb:26:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/lock.rb:11:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/lock.rb:11:in `synchronize'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/lock.rb:11:in `call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:114:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/reloader.rb:34:in
`run'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:108:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rails-2.3.5/lib/rails/rack/static.rb:31:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/urlmap.rb:46:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/urlmap.rb:40:in `each'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/urlmap.rb:40:in `call'
/usr/lib64/ruby/gems/1.8/gems/rails-2.3.5/lib/rails/rack/log_tailer.rb:17:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/content_length.rb:13:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/chunked.rb:15:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/handler/mongrel.rb:64:in
`process'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:159:in
`process_client'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:158:in `each'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:158:in
`process_client'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `run'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `initialize'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `new'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `run'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:268:in `initialize'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:268:in `new'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:268:in `run'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/handler/mongrel.rb:34:in `run'
/usr/lib64/ruby/gems/1.8/gems/rails-2.3.5/lib/commands/server.rb:111
/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in
`gem_original_require'
/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in `require'
script/server:3
/opt/oor/ui/lib/BioPortalRestfulCore.rb:696:in `get_xml'
/opt/oor/ui/lib/BioPortalRestfulCore.rb:188:in `getOntologyList'
/opt/oor/ui/app/models/data_access.rb:266:in `send'
/opt/oor/ui/app/models/data_access.rb:266:in `cache_pull'
/opt/oor/ui/app/models/data_access.rb:41:in `getOntologyList'
/opt/oor/ui/app/controllers/ontologies_controller.rb:15:in `index'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:1331:in
`send'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:1331:in
`perform_action_without_filters'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/filters.rb:617:in
`call_filters'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/filters.rb:610:in
`perform_action_without_benchmark'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/benchmarking.rb:68:in
`perform_action_without_rescue'
/usr/lib64/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/core_ext/benchmark.rb:17:in
`ms'
/usr/lib64/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/core_ext/benchmark.rb:10:in
`realtime'
/usr/lib64/ruby/gems/1.8/gems/activesupport-2.3.5/lib/active_support/core_ext/benchmark.rb:17:in
`ms'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/benchmarking.rb:68:in
`perform_action_without_rescue'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/rescue.rb:160:in
`perform_action_without_flash'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/flash.rb:146:in
`perform_action'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:532:in
`send'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:532:in
`process_without_filters'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/filters.rb:606:in
`process'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:391:in
`process'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/base.rb:386:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/routing/route_set.rb:437:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:87:in
`dispatch'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:121:in
`_call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:130:in
`build_middleware_stack'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:29:in
`call'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:29:in
`call'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/connection_adapters/abstract/query_cache.rb:34:in
`cache'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:9:in
`cache'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/query_cache.rb:28:in
`call'
/usr/lib64/ruby/gems/1.8/gems/activerecord-2.3.5/lib/active_record/connection_adapters/abstract/connection_pool.rb:361:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/string_coercion.rb:25:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/head.rb:9:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/methodoverride.rb:24:in `call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/params_parser.rb:15:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/session/cookie_store.rb:93:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/failsafe.rb:26:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/lock.rb:11:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/lock.rb:11:in `synchronize'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/lock.rb:11:in `call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:114:in
`call'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/reloader.rb:34:in
`run'
/usr/lib64/ruby/gems/1.8/gems/actionpack-2.3.5/lib/action_controller/dispatcher.rb:108:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rails-2.3.5/lib/rails/rack/static.rb:31:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/urlmap.rb:46:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/urlmap.rb:40:in `each'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/urlmap.rb:40:in `call'
/usr/lib64/ruby/gems/1.8/gems/rails-2.3.5/lib/rails/rack/log_tailer.rb:17:in
`call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/content_length.rb:13:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/chunked.rb:15:in `call'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/handler/mongrel.rb:64:in
`process'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:159:in
`process_client'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:158:in `each'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:158:in
`process_client'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `run'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `initialize'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `new'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:285:in `run'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:268:in `initialize'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:268:in `new'
/usr/lib64/ruby/gems/1.8/gems/mongrel-1.1.5/lib/mongrel.rb:268:in `run'
/usr/lib64/ruby/gems/1.8/gems/rack-1.0.1/lib/rack/handler/mongrel.rb:34:in `run'
/usr/lib64/ruby/gems/1.8/gems/rails-2.3.5/lib/commands/server.rb:111
/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in
`gem_original_require'
/usr/lib/ruby/site_ruby/1.8/rubygems/custom_require.rb:31:in `require'
script/server:3
Request
Parameters:
None
Show session dump
---
Response
Headers:
{"Content-Type"=>"",
"Cache-Control"=>"no-cache"}
//
I can still ping or ssh into the vm.
Any idea, Tejas, Paul or anyone?
Tejas, please help look into this.
Thanks in advance. =ppy
--
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