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[oor-dev] OOR-sandbox v2.4 to v2.5 upgrade [was - Re: BioPortal UI Now S

To: Paul R Alexander <palexander@xxxxxxxxxxxx>, OpenOntologyRepository-development <oor-dev@xxxxxxxxxxxxxxxx>
From: Peter Yim <peter.yim@xxxxxxxx>
Date: Fri, 6 Aug 2010 15:25:54 -0700
Message-id: <AANLkTimojQMTGs6PRWhbxssrw6VjiAcgE_yEb4PTnW3t@xxxxxxxxxxxxxx>
Thank you very much, Paul.    (01)

Attn: OOR team members    (02)

We will be making an upgrade to the OOR-sandbox (at
http://oor-01.cim3.net) install shortly to the BioPortal v2.5
implementation, with UI:tag#1041, Core:tag#1028, Admin:tag#1010 code;
running on Java 6 and Tomcat 6 (from the current BioPortal
implementation of v2.4 tag 1026, Java 6, Tomcat 5.5).    (03)

As Paul Alexander indicates, "notes" need to be migrated by hand. ...
I don't believe we have notes to migrate ... but I can't speak for
everyone.    (04)

Therefore, if you been using "notes" on the OOR-sandbox and really
wants that migrated too, please speak up (by replying immediately to
this thread) before the end of today. If so, we will try to coordinate
the migration with you.  Otherwise, the upgrade will go ahead without
that manual process.    (05)

Thanks & regards.  =ppy
--    (06)

On Fri, Aug 6, 2010 at 2:17 PM, Paul R Alexander
<palexander@xxxxxxxxxxxx> wrote:
> On 8/5/10 8:14 PM, Peter Yim wrote:
> [Tejas/ppy]  Is the tag 1041 for core or UI or both? What tag should be used
> for Admin module?
> [PaulA]  1041 is for the UI. It will work with the most recent tags of
> Core and Admin (Core: 1028; Admin: 1010)
> [Tejas/ppy]  We are already using java 6. Do we need to
> upgrade tomcat server?
> [PaulA]  We've just upgraded to Tomcat 6 with a production release for
> BioPortal that went live yesterday, so it is recommended to upgrade this
> as well.
> Also, if you have notes in the OOR instance they will need to be migrated.
> If you only have a few, doing it by hand is simplest. If you have enough
> that a script might be useful, please let me know and I can provide one for
> you to work with.
> Paul R Alexander
> Web / UI Developer
> NCBO BioPortal
> Stanford Center for Biomedical Informatics Research    (07)

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