+--------------------------------------------------------+
| Notes taken by jchatigny during installation of OOR UI |
|                                                        |
| See also: INSTALL-CORE.txt                             |
+--------------------------------------------------------+

> cd ~/project/svn/trunk/bioportalui/conf
> cp database.yml.sample database.yml

+--------------------------------------------------+ 
| Copied database.yml.sample -> database.yml       |
| Customized 'development' section for our config: |
|                                                  |
|   database: BioportalGui_development             |
|   username: bioportal_prd                        |
|   password: bioportal_prd                        |
+--------------------------------------------------+

> cp environment.rb.sample environment.rb

+----------------------------------------------------+ 
| Copied environment.rb.sample -> environment.rb     |
|                                                    |
| Added:                                             |
|   require 'memcache'                               |
|                                                    |
| Customized as follows:                             |
|                                                    |
|  RAILS_GEM_VERSION = '2.3.5'                       |
|  $REST_URL="http://oor.dsl.bbn.com:8086/bioportal" |
|  $REST_PORT="8086"                                 |
|  $SITE_NAME = "Raytheon BBN OOR"                   |
|  $ADMIN_EMAIL = "jchatigny@xxxxxxx"                |
|  $ERROR_EMAIL = "jchatigny@xxxxxxx"                |
+----------------------------------------------------+

+----------------------------------------------------------------------------+
| Commented out the following line in environments/development.rb:           |
|  config.action_view.cache_template_extensions = false                      |
|                                                                            |
| Else, the rake step fails with the following error:                        |
|  undefined method `cache_template_extensions=' for ActionView::Base:Class" |
+----------------------------------------------------------------------------+

+-------------------------------------------------+
| Created new database 'bioportalGui_development' |
+-------------------------------------------------+

> mysql --user=root --password=********
> create database bioportalGui_development;
> exit

> cd ~/project/svn/trunk/bioportalui
> rake db:migrate

+---------------------------------------------------------+
| Started memcached in background (use default port 1121) |
|  > nohup memcached &                                    |
+---------------------------------------------------------+

+-------------------------------------------+
| Can now run ui (-d for disconnected mode) |
|  > ruby script/server -d                  |                  
+-------------------------------------------+

Using http://oor.dsl.bbn.com:3000 yields some errors....

(1) Add require 'ApplicationController' to each subclass defined
    in the app/controllers directory (e.g. home_controller.rb, etc.)

(2) Make the function 'clear_reloadable_connections' be a complete
    no-op in the file vendor/plugins/spawn/lib/patches.rb

+--------------------------------------------------------+
| UI database (bioportalGUI_development) did not contain |
| the table 'event_items'.                               |
|                                                        |
| Copied bioportalui/db/schema.rb -> schema.rb.SAFE      |
| Then did > svn revert on schema.rb                     |
| Them did > rake db:schema:load                         |
|                                                        |
| That added the event_items table                       |
+--------------------------------------------------------+

+--------------------------------------------------------------------------------------------------------------------+
| Fix jquery javascript errors associated with 'cursorMessage'; e.g.                                                 | 
|  > ActionController::RoutingError (No route matches "/stylesheets/jquery.cursorMessage.css" with {:method=>:get}): |
|  > ActionController::RoutingError (No route matches "/javascripts/jquery.cursorMessage.js" with {:method=>:get}):  |
+--------------------------------------------------------------------------------------------------------------------+

    Downloaded jquery cursorMessage plugin version 0.2
    Added the following files:
    - buiportalui/public/javascripts/JqueryPlugins/jquery.cursorMessage.css
    - buiportalui/public/javascripts/JqueryPlugins/jquery.cursorMessage.js

+--------------------------------------------------------------------------------------+
| Fix error: ActionView::TemplateError (undefined class/module OntologyMetricsWrapper) |
+--------------------------------------------------------------------------------------+

    Added require 'ontology_metrics_wrapper' to bioportalui/app/models/data_access.rb

+---------------------------------------------------+
| Uploading ontologies seems to work correctly now. |
| Have not tested other features (e.g. mappings).   |
+---------------------------------------------------+