I'm assuming that not all uploads are broken? It seems as though OOR
has some ontologies hosted already, were those submitted via the UI?
There's a few things to consider here. First, upload size limits:
- BioPortal UI restricts uploads to 20MB unless the user is an
admin (no limit). This can be changed here:
- File: app/controllers/ontologies_controller.rb
- Code: if params[:isRemote].to_i.eql?(0) &&
params[:filePath].size.to_i > 20000000 &&
!session[:user].admin?
- Change the 20000000 to your desired limit
- Tomcat's default upload size limit is 2MB. This can be changed
here:
This will likely fix problems related to the following errors:
NoMethodError in OntologiesController#create
undefined method `io' for #<REXML::ParseException:0x2b52c5ef1d50>
RAILS_ROOT: /usr/local/bioportal/bioportalui_oor
lib/BioPortalRestfulCore.rb:545:in `createOntology'
The ActiveRecord errors are associated with a missing table, I believe.
Please try running the following from the Rails app root directory:
rake db:schema:load
WARNING: This is destructive and will wipe out any UI-related data
(mappings, notes, etc) as it creates all of the necessary tables. You
should backup the data and re-import it after the process is complete.
On 1/14/10 6:55 PM, Tejas Parikh wrote:
Yavuz was trying to upload ontologies on OOR sandbox
(oor-01f.cim3.net) and ran into couple of problems. He tried these
uploads on 12/29/2009.
I am attaching screenshots of the error and server logs. Please
provide feedback on whether this is an installation problem or
something else.
Thanks,
--Tejas
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