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Re: [oor-dev] Error install BioPortal UI

To: OpenOntologyRepository-development <oor-dev@xxxxxxxxxxxxxxxx>, YAMADA Shinya <shinya@xxxxxxxxxxxxx>
From: Tejas Parikh <tejas@xxxxxxxxxxxxxxx>
Date: Wed, 18 Nov 2009 15:12:14 -0500
Message-id: <63274c480911181212o31d336ces17966aee19d416cc@xxxxxxxxxxxxxx>
Shinya,    (01)

Do you (cim3) have an rpm for MySQL-devel-community that I can use for
bioportal. Can you please put it in  the /home/tejas/downloads
directory.    (02)

Thanks,
--Tejas    (03)



On Wed, Nov 18, 2009 at 2:54 PM, Paul R Alexander
<palexander@xxxxxxxxxxxx> wrote:
> You might need to define these as well:
> --with-mysql-lib
> --with-mysql-config
>
> On 11/18/09 11:44 AM, Tejas Parikh wrote:
>> I am trying to execute following command
>> sudo gem install mysql -- --with-mysql-dir=/usr/share/mysql
>>
>> and getting error
>>
>>
>> Building native extensions.  This could take a while...
>> ERROR:  Error installing mysql:
>>          ERROR: Failed to build gem native extension.
>>
>> /usr/bin/ruby extconf.rb --with-mysql-dir=/usr/share/mysql
>> checking for mysql_query() in -lmysqlclient... no
>> checking for main() in -lm... no
>> checking for mysql_query() in -lmysqlclient... no
>> checking for main() in -lz... no
>> checking for mysql_query() in -lmysqlclient... no
>> checking for main() in -lsocket... no
>> checking for mysql_query() in -lmysqlclient... no
>> checking for main() in -lnsl... no
>> checking for mysql_query() in -lmysqlclient... no
>> checking for main() in -lmygcc... no
>> checking for mysql_query() in -lmysqlclient... no
>> *** extconf.rb failed ***
>> Could not create Makefile due to some reason, probably lack of
>> necessary libraries and/or headers.  Check the mkmf.log file for more
>> details.  You may need configuration options.
>>
>> Provided configuration options:
>>          --with-opt-dir
>>          --without-opt-dir
>>          --with-opt-include
>>          --without-opt-include=${opt-dir}/include
>>          --with-opt-lib
>>          --without-opt-lib=${opt-dir}/lib
>>          --with-make-prog
>>          --without-make-prog
>>          --srcdir=.
>>          --curdir
>>          --ruby=/usr/bin/ruby
>>          --with-mysql-config
>>          --without-mysql-config
>>          --with-mysql-dir
>>          --with-mysql-include
>>          --without-mysql-include=${mysql-dir}/include
>>          --with-mysql-lib
>>          --without-mysql-lib=${mysql-dir}/lib
>>          --with-mysqlclientlib
>>          --without-mysqlclientlib
>>          --with-mlib
>>          --without-mlib
>>          --with-mysqlclientlib
>>          --without-mysqlclientlib
>>          --with-zlib
>>          --without-zlib
>>          --with-mysqlclientlib
>>          --without-mysqlclientlib
>>          --with-socketlib
>>          --without-socketlib
>>          --with-mysqlclientlib
>>          --without-mysqlclientlib
>>          --with-nsllib
>>          --without-nsllib
>>          --with-mysqlclientlib
>>          --without-mysqlclientlib
>>          --with-mygcclib
>>          --without-mygcclib
>>          --with-mysqlclientlib
>>          --without-mysqlclientlib
>>
>>
>> Gem files will remain installed in
>> /usr/lib64/ruby/gems/1.8/gems/mysql-2.8.1 for
>>                       inspection.
>> Results logged to
>> /usr/lib64/ruby/gems/1.8/gems/mysql-2.8.1/ext/mysql_api/gem_make.out
>>
>>
>> Thanks,
>> --Tejas
>>
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>>
>
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>    (04)

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