ppy/oor-call_chat-transcript_unedited_20120131a.txt

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Chat transcript from room: oor_20120131
2012-01-31 GMT-08:00

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[08:24] PeterYim: Welcome to the 

 = OpenOntologyRepository: Architecture & API Workshop-X - Tue 2012_01_31 =

Topic: "OOR Architecture & API Specification Development Workshop-X"

Session Co-chairs: Dr. ToddSchneider & Professor KenBaclawski 

Conference Call Details:

* Date: Tuesday, 31-Jan-2012 
* Start Time: 8:30am PST / 11:30am EST / 5:30pm CET / 16:30 UTC 
* Expected Call Duration: ~1.5 hours 


Session page: http://ontolog.cim3.net/cgi-bin/wiki.pl?OOR/ConferenceCall_2012_01_31 

Can't find Skype Dial pad? ... it's under the "Call" dropdown menu as "Show Dial pad"

 .
 == Proceedings: ==
 .

[08:24] PeterYim: The EA HTML report Todd has just produced can be found at http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_Build3253_Nov2011_EA_Model--ToddSchneider_20120130/BioPortal_Build3253_EA_HTML_Report/index.html

[08:34] PeterYim: Todd: ref. http://ontolog.cim3.net/file/work/OOR/oor-dev/

[08:34] ToddSchneider: http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_Build3253_Nov2011_EA_Model--ToddSchneider_20120130/

[08:35] PeterYim: Todd: the xml file is at: http://ontolog.cim3.net/file/work/OOR/oor-dev/BioPortal_Build3253_Nov2011_EA_Model--ToddSchneider_20120130/BioPortal_Build3253_Nov2011_EA_Model.xml

[08:47] PeterYim: Todd / Ken: ref. MikeDean's question: "are javadoc's available?" ... answer: seemingly "no!"

[09:00] PeterYim: [consensus] our approach toward code contribution (/extension from the BioPortal codebase): (a) KenBaclawski-ToddSchnieder to focus on "gatekeeping"; (b) MikeDean on "federation", and (c) MichaelGruninger on "metadata" then "mapping"

[09:00] ToddSchneider: Action Plan: Michael and his team will focus on metadata (and then mapping); Mike Dean will focus on federation capabilities; Ken and Todd will focus on workflow

[09:01] MichaelGruninger: leaving now ...

[09:01] PeterYim: thanks, Michael .. bye!

[09:03] MikeDean: like idea of an OOR service layer that includes OOR-specific services (e.g. Find) and can be easily adapted to new BioPortal releases

[09:04] PeterYim: as far as ncbo - RayFergerson is concerned, he'd appreciate all code extensions to be implemented on "tabs"

[09:04] MikeDean: it's easy to add new tabs to the UI

[09:10] MikeDean: http://palexander.posterous.com/extending-bioportals-rails-ui

[09:14] ToddSchneider: The three 'action items' will have there own tabs: adjuncts to the current BioPortal UI

[09:16] ToddSchneider: Need to find out if BioPortal data model supports 'location' (i.e., repository location/id) information

[09:18] ToddSchneider: How will access control across federates be handled?

[09:22] ToddSchneider: There may be additional fields from OMV that OOR will need.

[09:24] ToddSchneider: Can the OMV interface be generated dynamically from the OMV ontology? This may break some existing BioPortal code.

[09:31] ToddSchneider: Each of items of the 'action plan' will be added as a new tab (on the current UI).

[09:41] ToddSchneider: The federation tab will be labeled 'Federation' (this may only be visible to administrators); The workflow tab will initially expose the uploading capability of the gatekeeper functionality. Other gatekeeper capabilities/functionalities will be exposed on other tabs.

[09:43] ToddSchneider: Another action item is to agree on tab labels for the 'upload' and 'metadata' tabs.

[09:56] PeterYim: [action] trageting this - Mike, Ken & Michael will all try to have a prototype tab (even a "hello world" tab) done by our next workshop

[09:57] KenBaclawski: Subject: [oor-dev] Problem with extending the UI 
  I am trying to extend the BioPortal Rails UI on oor-03 using
  http://palexander.posterous.com/extending-bioportals-rails-ui
  It seems one must use
  cd /srv/ncbo/rails/BioPortal/current
  rather than
  cd /var/rails/BioPortal/current
  There is a script/generate, but when I try running it, I get
  /usr/bin/env: ruby: No such file or directory
  Does anyone have some idea of how this can be fixed?
  -- Ken

[09:57] PeterYim: Ken has fired the above question to PaulAlexander - http://ontolog.cim3.net/forum/oor-dev/2012-01/msg00016.html

[09:58] PeterYim: MikeDean gave a brief report on the SOCoP-OOR at the INTEROP NSF PI meeting

[10:01] ToddSchneider: Can we pose a question to BioPortal to see if they would be open to moving the 'Submit New Ontology' functionality to a new tab, called 'Submit'?

[10:02] ToddSchneider: Have to go.

[10:04] KenBaclawski: I will continue to find out how to fix the captcha feature. Until it is fixed, captcha is off.

[10:12] PeterYim: who is anonymous?

[10:13] PeterYim: let's talk about the next workshops at next Tuesday's regular OOR team meeting

[10:14] PeterYim: MikeDean: I'll probably be missing next week's meeting, because i'll be traveling

[10:14] PeterYim: good meeting ... got a lot done ... bye!

[10:14] PeterYim: -- session ended: 10:14am PST --

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